miRNA display CGI


Results 41 - 60 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29810 3' -55.3 NC_006273.1 + 183753 0.67 0.95787
Target:  5'- cGGGugcUGUCcgcGCCGcCGagccugCCGUCGCCCg -3'
miRNA:   3'- -CCU---GCAGaa-CGGCaGCa-----GGCAGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 38736 0.68 0.950376
Target:  5'- cGGCGUCUguagUGCCaccGUCGUgCCGgccCACCg -3'
miRNA:   3'- cCUGCAGA----ACGG---CAGCA-GGCa--GUGGg -5'
29810 3' -55.3 NC_006273.1 + 233628 0.68 0.950376
Target:  5'- cGGCGUCUguagUGCCaccGUCGUgCCGgccCACCg -3'
miRNA:   3'- cCUGCAGA----ACGG---CAGCA-GGCa--GUGGg -5'
29810 3' -55.3 NC_006273.1 + 105358 0.68 0.950376
Target:  5'- aGGAUGaagUGaCCGugaugUCG-CCGUCACCCg -3'
miRNA:   3'- -CCUGCagaAC-GGC-----AGCaGGCAGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 24682 0.68 0.946315
Target:  5'- -cGCG-C-UGCCGUCGUCCGUU-CCg -3'
miRNA:   3'- ccUGCaGaACGGCAGCAGGCAGuGGg -5'
29810 3' -55.3 NC_006273.1 + 38320 0.68 0.946315
Target:  5'- uGAcCGUCgccgUGUCGUCG-CCGcCACCg -3'
miRNA:   3'- cCU-GCAGa---ACGGCAGCaGGCaGUGGg -5'
29810 3' -55.3 NC_006273.1 + 54032 0.68 0.946315
Target:  5'- cGGACGUCacgccgGCgGUUGUuaCCGUCGuCUCg -3'
miRNA:   3'- -CCUGCAGaa----CGgCAGCA--GGCAGU-GGG- -5'
29810 3' -55.3 NC_006273.1 + 25221 0.68 0.946315
Target:  5'- cGuCGUCaacGCCGUUGUCCacccucUCGCCCu -3'
miRNA:   3'- cCuGCAGaa-CGGCAGCAGGc-----AGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 221561 0.68 0.942042
Target:  5'- --cCGUCggucCCGaCGUCCGUCGCCa -3'
miRNA:   3'- ccuGCAGaac-GGCaGCAGGCAGUGGg -5'
29810 3' -55.3 NC_006273.1 + 213139 0.68 0.942042
Target:  5'- -cGCGUCgcucGCCGgCGcCCGUCAUCUg -3'
miRNA:   3'- ccUGCAGaa--CGGCaGCaGGCAGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 197976 0.68 0.937553
Target:  5'- cGACGaaUUGCCGUCGcgCC--CACCCc -3'
miRNA:   3'- cCUGCagAACGGCAGCa-GGcaGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 47906 0.69 0.932848
Target:  5'- -cGCGUCUUcGUCGUCGUCCucagCAUCUc -3'
miRNA:   3'- ccUGCAGAA-CGGCAGCAGGca--GUGGG- -5'
29810 3' -55.3 NC_006273.1 + 138888 0.69 0.932848
Target:  5'- gGGAUgaugaaccaaGUCUUGCCGUgaCGUCgCGgCACCa -3'
miRNA:   3'- -CCUG----------CAGAACGGCA--GCAG-GCaGUGGg -5'
29810 3' -55.3 NC_006273.1 + 137487 0.69 0.932848
Target:  5'- cGGGCGgcuUUGCCGUCucuucgCgCGUCACUCu -3'
miRNA:   3'- -CCUGCag-AACGGCAGca----G-GCAGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 72464 0.69 0.932848
Target:  5'- --cCGUCggUGCCGgcggccaCGUCCGUCACg- -3'
miRNA:   3'- ccuGCAGa-ACGGCa------GCAGGCAGUGgg -5'
29810 3' -55.3 NC_006273.1 + 206308 0.69 0.927927
Target:  5'- cGG-UGUUUUGCCGUCGuuuuuuuuuUCCGgaucgGCCCg -3'
miRNA:   3'- -CCuGCAGAACGGCAGC---------AGGCag---UGGG- -5'
29810 3' -55.3 NC_006273.1 + 37138 0.69 0.927927
Target:  5'- cGGAgGUgCUggcgGCCGUgGcCUGUgGCCCg -3'
miRNA:   3'- -CCUgCA-GAa---CGGCAgCaGGCAgUGGG- -5'
29810 3' -55.3 NC_006273.1 + 177019 0.69 0.922787
Target:  5'- uGGCGUCUuccacgcugaucUGCaCGUU-UCCGUCGCUCg -3'
miRNA:   3'- cCUGCAGA------------ACG-GCAGcAGGCAGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 124028 0.69 0.922787
Target:  5'- cGGCGUUUucaggaggagacUGUCGUCGUCgGUacuggcgaCACCCa -3'
miRNA:   3'- cCUGCAGA------------ACGGCAGCAGgCA--------GUGGG- -5'
29810 3' -55.3 NC_006273.1 + 87575 0.69 0.921203
Target:  5'- gGGGCuGUUgcUGCUGUugaugaugcgacgcCGUCCGUCGCCg -3'
miRNA:   3'- -CCUG-CAGa-ACGGCA--------------GCAGGCAGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.