miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29810 3' -55.3 NC_006273.1 + 54389 0.71 0.866947
Target:  5'- cGugGUCUccUCGUCGUCCGacucggUACCCa -3'
miRNA:   3'- cCugCAGAacGGCAGCAGGCa-----GUGGG- -5'
29810 3' -55.3 NC_006273.1 + 67109 0.7 0.890022
Target:  5'- cGACGUUUUuugacGCCGUCaGUCUGUuauugcagcaacugcCACCCg -3'
miRNA:   3'- cCUGCAGAA-----CGGCAG-CAGGCA---------------GUGGG- -5'
29810 3' -55.3 NC_006273.1 + 72464 0.69 0.932848
Target:  5'- --cCGUCggUGCCGgcggccaCGUCCGUCACg- -3'
miRNA:   3'- ccuGCAGa-ACGGCa------GCAGGCAGUGgg -5'
29810 3' -55.3 NC_006273.1 + 78424 0.66 0.983911
Target:  5'- cGcCGUCagcGUCGUCGUCCGU-GCCa -3'
miRNA:   3'- cCuGCAGaa-CGGCAGCAGGCAgUGGg -5'
29810 3' -55.3 NC_006273.1 + 81947 0.66 0.980082
Target:  5'- uGGAaGUCUUGCCGgCGcCCGccgUGCCg -3'
miRNA:   3'- -CCUgCAGAACGGCaGCaGGCa--GUGGg -5'
29810 3' -55.3 NC_006273.1 + 82887 0.67 0.967596
Target:  5'- cGGugGU--UGCCcaacaggauuucGUUGUCC-UCGCCCa -3'
miRNA:   3'- -CCugCAgaACGG------------CAGCAGGcAGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 83381 0.67 0.96131
Target:  5'- gGGccACGUCgggcUGCUGcCG-CCGcCACCCg -3'
miRNA:   3'- -CC--UGCAGa---ACGGCaGCaGGCaGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 85758 0.72 0.812701
Target:  5'- aGcCGUUUucgcUGCCGUCG-CCGUCcuGCCCa -3'
miRNA:   3'- cCuGCAGA----ACGGCAGCaGGCAG--UGGG- -5'
29810 3' -55.3 NC_006273.1 + 87575 0.69 0.921203
Target:  5'- gGGGCuGUUgcUGCUGUugaugaugcgacgcCGUCCGUCGCCg -3'
miRNA:   3'- -CCUG-CAGa-ACGGCA--------------GCAGGCAGUGGg -5'
29810 3' -55.3 NC_006273.1 + 94638 0.66 0.985602
Target:  5'- cGGACGggac-CCGggGUCCG-CGCCCu -3'
miRNA:   3'- -CCUGCagaacGGCagCAGGCaGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 96949 0.75 0.626622
Target:  5'- gGGACGUa--GCCGgCGUCCGgCACCUa -3'
miRNA:   3'- -CCUGCAgaaCGGCaGCAGGCaGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 98550 0.71 0.85973
Target:  5'- gGGACGUCgggGCCc---UCCGUCGCaCCg -3'
miRNA:   3'- -CCUGCAGaa-CGGcagcAGGCAGUG-GG- -5'
29810 3' -55.3 NC_006273.1 + 102629 0.66 0.982826
Target:  5'- cGGcACGUCguacagcucgucccUGCUGUCGUC-GUCucCCCg -3'
miRNA:   3'- -CC-UGCAGa-------------ACGGCAGCAGgCAGu-GGG- -5'
29810 3' -55.3 NC_006273.1 + 105358 0.68 0.950376
Target:  5'- aGGAUGaagUGaCCGugaugUCG-CCGUCACCCg -3'
miRNA:   3'- -CCUGCagaAC-GGC-----AGCaGGCAGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 109513 0.66 0.983734
Target:  5'- cGGGCGUgccuccugcaugCUgGCCGUCGaUCCGUacgacacggaggcCGCCa -3'
miRNA:   3'- -CCUGCA------------GAaCGGCAGC-AGGCA-------------GUGGg -5'
29810 3' -55.3 NC_006273.1 + 112421 0.66 0.985439
Target:  5'- cGGACG-CUgcuacaaccaccgUGUCGUccgCGUUCGUCGuCCCc -3'
miRNA:   3'- -CCUGCaGA-------------ACGGCA---GCAGGCAGU-GGG- -5'
29810 3' -55.3 NC_006273.1 + 116081 0.75 0.655895
Target:  5'- cGGCGUCUUGCgacuaagcacggCGUgGUCCGagaCACCCa -3'
miRNA:   3'- cCUGCAGAACG------------GCAgCAGGCa--GUGGG- -5'
29810 3' -55.3 NC_006273.1 + 121023 0.66 0.983911
Target:  5'- aGACGUC--GUCGUCGcCCuGggcggCACCCu -3'
miRNA:   3'- cCUGCAGaaCGGCAGCaGG-Ca----GUGGG- -5'
29810 3' -55.3 NC_006273.1 + 123353 0.66 0.980082
Target:  5'- uGGGCGUCagauCCG-CGUCCGUUgauUCCg -3'
miRNA:   3'- -CCUGCAGaac-GGCaGCAGGCAGu--GGG- -5'
29810 3' -55.3 NC_006273.1 + 124028 0.69 0.922787
Target:  5'- cGGCGUUUucaggaggagacUGUCGUCGUCgGUacuggcgaCACCCa -3'
miRNA:   3'- cCUGCAGA------------ACGGCAGCAGgCA--------GUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.