Results 41 - 60 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29810 | 3' | -55.3 | NC_006273.1 | + | 129669 | 0.71 | 0.829046 |
Target: 5'- aGGACGcccgCUU-CUGUCGUCCGcgACCCg -3' miRNA: 3'- -CCUGCa---GAAcGGCAGCAGGCagUGGG- -5' |
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29810 | 3' | -55.3 | NC_006273.1 | + | 133574 | 0.66 | 0.980082 |
Target: 5'- cGAuCGUCUcguuucugccgaUGCCGgCGUCaGUCGCCg -3' miRNA: 3'- cCU-GCAGA------------ACGGCaGCAGgCAGUGGg -5' |
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29810 | 3' | -55.3 | NC_006273.1 | + | 133728 | 0.66 | 0.981687 |
Target: 5'- uGGCGUUggccgaguagcgUGCCGUCGUgCCuUCGgCCa -3' miRNA: 3'- cCUGCAGa-----------ACGGCAGCA-GGcAGUgGG- -5' |
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29810 | 3' | -55.3 | NC_006273.1 | + | 137487 | 0.69 | 0.932848 |
Target: 5'- cGGGCGgcuUUGCCGUCucuucgCgCGUCACUCu -3' miRNA: 3'- -CCUGCag-AACGGCAGca----G-GCAGUGGG- -5' |
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29810 | 3' | -55.3 | NC_006273.1 | + | 137634 | 1.15 | 0.003186 |
Target: 5'- gGGACGUCUUGCCGUCGUCCGUCACCCg -3' miRNA: 3'- -CCUGCAGAACGGCAGCAGGCAGUGGG- -5' |
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29810 | 3' | -55.3 | NC_006273.1 | + | 138888 | 0.69 | 0.932848 |
Target: 5'- gGGAUgaugaaccaaGUCUUGCCGUgaCGUCgCGgCACCa -3' miRNA: 3'- -CCUG----------CAGAACGGCA--GCAG-GCaGUGGg -5' |
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29810 | 3' | -55.3 | NC_006273.1 | + | 139669 | 0.7 | 0.887429 |
Target: 5'- cGGACGUggCUUGUgGgacgggCG-CCGUCACUCg -3' miRNA: 3'- -CCUGCA--GAACGgCa-----GCaGGCAGUGGG- -5' |
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29810 | 3' | -55.3 | NC_006273.1 | + | 140532 | 0.7 | 0.900065 |
Target: 5'- gGGGCGUCgc-CCGUCcccaccaCCGUCcACCCg -3' miRNA: 3'- -CCUGCAGaacGGCAGca-----GGCAG-UGGG- -5' |
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29810 | 3' | -55.3 | NC_006273.1 | + | 152454 | 0.67 | 0.973121 |
Target: 5'- cGGAUGUgCUUGCCG-CGcagCUG-CGCCUc -3' miRNA: 3'- -CCUGCA-GAACGGCaGCa--GGCaGUGGG- -5' |
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29810 | 3' | -55.3 | NC_006273.1 | + | 154113 | 0.71 | 0.852325 |
Target: 5'- cGGACGcCauacGCCGU-GUCUGUCACgCCg -3' miRNA: 3'- -CCUGCaGaa--CGGCAgCAGGCAGUG-GG- -5' |
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29810 | 3' | -55.3 | NC_006273.1 | + | 157150 | 0.66 | 0.983911 |
Target: 5'- aGGcUGUaaccaacgUGCUGUCGcCCGUCuuuCCCg -3' miRNA: 3'- -CCuGCAga------ACGGCAGCaGGCAGu--GGG- -5' |
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29810 | 3' | -55.3 | NC_006273.1 | + | 161647 | 0.67 | 0.96455 |
Target: 5'- cGGGCcUCg-GCCGcCG-CCGcCACCCa -3' miRNA: 3'- -CCUGcAGaaCGGCaGCaGGCaGUGGG- -5' |
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29810 | 3' | -55.3 | NC_006273.1 | + | 162977 | 0.77 | 0.530237 |
Target: 5'- cGGugGUUUcgucGCCGUCGUCgaCGUCGCCg -3' miRNA: 3'- -CCugCAGAa---CGGCAGCAG--GCAGUGGg -5' |
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29810 | 3' | -55.3 | NC_006273.1 | + | 169672 | 0.67 | 0.967596 |
Target: 5'- aGGACGgc--GCCGUgG-CCGUUGCCg -3' miRNA: 3'- -CCUGCagaaCGGCAgCaGGCAGUGGg -5' |
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29810 | 3' | -55.3 | NC_006273.1 | + | 170110 | 0.67 | 0.970451 |
Target: 5'- cGGugGUCguugucgcUGCCGU-GUCCG-CGCUUu -3' miRNA: 3'- -CCugCAGa-------ACGGCAgCAGGCaGUGGG- -5' |
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29810 | 3' | -55.3 | NC_006273.1 | + | 171011 | 0.67 | 0.967596 |
Target: 5'- cGGACGUCgcgccUGCCGUUGauucUUCGUgAUCg -3' miRNA: 3'- -CCUGCAGa----ACGGCAGC----AGGCAgUGGg -5' |
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29810 | 3' | -55.3 | NC_006273.1 | + | 171614 | 0.66 | 0.982073 |
Target: 5'- --cCGUCacGCCGUCcUCCGagaggcgCGCCCg -3' miRNA: 3'- ccuGCAGaaCGGCAGcAGGCa------GUGGG- -5' |
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29810 | 3' | -55.3 | NC_006273.1 | + | 175666 | 0.66 | 0.983911 |
Target: 5'- cGGCGauaugGCCucauaUCGUCUGUCACCUa -3' miRNA: 3'- cCUGCagaa-CGGc----AGCAGGCAGUGGG- -5' |
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29810 | 3' | -55.3 | NC_006273.1 | + | 177019 | 0.69 | 0.922787 |
Target: 5'- uGGCGUCUuccacgcugaucUGCaCGUU-UCCGUCGCUCg -3' miRNA: 3'- cCUGCAGA------------ACG-GCAGcAGGCAGUGGG- -5' |
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29810 | 3' | -55.3 | NC_006273.1 | + | 177568 | 0.66 | 0.985439 |
Target: 5'- cGGGCGUCUUcgcagcguucccgGUCGUCGUgUGU-GCUCu -3' miRNA: 3'- -CCUGCAGAA-------------CGGCAGCAgGCAgUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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