miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29810 3' -55.3 NC_006273.1 + 235265 0.67 0.970451
Target:  5'- -cACGUCgcuuuuauucGCCGUCG-CCG-UACCCa -3'
miRNA:   3'- ccUGCAGaa--------CGGCAGCaGGCaGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 234596 0.71 0.85973
Target:  5'- cGGACGgCU--CCGUCGUCCGUgUGCCa -3'
miRNA:   3'- -CCUGCaGAacGGCAGCAGGCA-GUGGg -5'
29810 3' -55.3 NC_006273.1 + 233628 0.68 0.950376
Target:  5'- cGGCGUCUguagUGCCaccGUCGUgCCGgccCACCg -3'
miRNA:   3'- cCUGCAGA----ACGG---CAGCA-GGCa--GUGGg -5'
29810 3' -55.3 NC_006273.1 + 233416 0.66 0.982073
Target:  5'- cGACGUCguccCCGUCG-CCGgC-CCCg -3'
miRNA:   3'- cCUGCAGaac-GGCAGCaGGCaGuGGG- -5'
29810 3' -55.3 NC_006273.1 + 226309 0.66 0.982073
Target:  5'- aGACGUCgucGUccucguccucuuCGUCGUCUGU-GCCCg -3'
miRNA:   3'- cCUGCAGaa-CG------------GCAGCAGGCAgUGGG- -5'
29810 3' -55.3 NC_006273.1 + 223309 0.66 0.980082
Target:  5'- aGGGCGUUUcggGcCCGUCGgugacagCCGcgCugCCa -3'
miRNA:   3'- -CCUGCAGAa--C-GGCAGCa------GGCa-GugGG- -5'
29810 3' -55.3 NC_006273.1 + 221561 0.68 0.942042
Target:  5'- --cCGUCggucCCGaCGUCCGUCGCCa -3'
miRNA:   3'- ccuGCAGaac-GGCaGCAGGCAGUGGg -5'
29810 3' -55.3 NC_006273.1 + 220252 0.66 0.975612
Target:  5'- -uGCGUCccgGCCGcggaCGUCCcGUCACgCCu -3'
miRNA:   3'- ccUGCAGaa-CGGCa---GCAGG-CAGUG-GG- -5'
29810 3' -55.3 NC_006273.1 + 215160 0.67 0.970451
Target:  5'- cGcCGUCUuucgUGCCGUCG-CCGcacugcguugUCACUCg -3'
miRNA:   3'- cCuGCAGA----ACGGCAGCaGGC----------AGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 213858 0.72 0.787083
Target:  5'- cGACGguggGUCGUCGUCCcGUC-CCCg -3'
miRNA:   3'- cCUGCagaaCGGCAGCAGG-CAGuGGG- -5'
29810 3' -55.3 NC_006273.1 + 213139 0.68 0.942042
Target:  5'- -cGCGUCgcucGCCGgCGcCCGUCAUCUg -3'
miRNA:   3'- ccUGCAGaa--CGGCaGCaGGCAGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 206308 0.69 0.927927
Target:  5'- cGG-UGUUUUGCCGUCGuuuuuuuuuUCCGgaucgGCCCg -3'
miRNA:   3'- -CCuGCAGAACGGCAGC---------AGGCag---UGGG- -5'
29810 3' -55.3 NC_006273.1 + 198347 0.66 0.97793
Target:  5'- aGGACGU---GCUGUCGUUCuUCGCUUg -3'
miRNA:   3'- -CCUGCAgaaCGGCAGCAGGcAGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 198129 0.73 0.731701
Target:  5'- cGGCGUCUUccuccucGUCGUCGccgCCGUCGCgCCu -3'
miRNA:   3'- cCUGCAGAA-------CGGCAGCa--GGCAGUG-GG- -5'
29810 3' -55.3 NC_006273.1 + 197976 0.68 0.937553
Target:  5'- cGACGaaUUGCCGUCGcgCC--CACCCc -3'
miRNA:   3'- cCUGCagAACGGCAGCa-GGcaGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 196855 0.66 0.980082
Target:  5'- cGGugGUgc--CCGUCGUCCucGUCuCCCc -3'
miRNA:   3'- -CCugCAgaacGGCAGCAGG--CAGuGGG- -5'
29810 3' -55.3 NC_006273.1 + 195327 0.67 0.970451
Target:  5'- -cACGUCgcuuuuauucGCCGUCG-CCG-UACCCa -3'
miRNA:   3'- ccUGCAGaa--------CGGCAGCaGGCaGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 189448 0.66 0.980082
Target:  5'- uGACGgagCUcGUCGUCGUCCuccUCuCCCu -3'
miRNA:   3'- cCUGCa--GAaCGGCAGCAGGc--AGuGGG- -5'
29810 3' -55.3 NC_006273.1 + 187334 0.66 0.975612
Target:  5'- cGACGUCggucaGCgG-CG-CCGUCACCg -3'
miRNA:   3'- cCUGCAGaa---CGgCaGCaGGCAGUGGg -5'
29810 3' -55.3 NC_006273.1 + 183753 0.67 0.95787
Target:  5'- cGGGugcUGUCcgcGCCGcCGagccugCCGUCGCCCg -3'
miRNA:   3'- -CCU---GCAGaa-CGGCaGCa-----GGCAGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.