miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29810 3' -55.3 NC_006273.1 + 177568 0.66 0.985439
Target:  5'- cGGGCGUCUUcgcagcguucccgGUCGUCGUgUGU-GCUCu -3'
miRNA:   3'- -CCUGCAGAA-------------CGGCAGCAgGCAgUGGG- -5'
29810 3' -55.3 NC_006273.1 + 177019 0.69 0.922787
Target:  5'- uGGCGUCUuccacgcugaucUGCaCGUU-UCCGUCGCUCg -3'
miRNA:   3'- cCUGCAGA------------ACG-GCAGcAGGCAGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 175666 0.66 0.983911
Target:  5'- cGGCGauaugGCCucauaUCGUCUGUCACCUa -3'
miRNA:   3'- cCUGCagaa-CGGc----AGCAGGCAGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 171614 0.66 0.982073
Target:  5'- --cCGUCacGCCGUCcUCCGagaggcgCGCCCg -3'
miRNA:   3'- ccuGCAGaaCGGCAGcAGGCa------GUGGG- -5'
29810 3' -55.3 NC_006273.1 + 171011 0.67 0.967596
Target:  5'- cGGACGUCgcgccUGCCGUUGauucUUCGUgAUCg -3'
miRNA:   3'- -CCUGCAGa----ACGGCAGC----AGGCAgUGGg -5'
29810 3' -55.3 NC_006273.1 + 170110 0.67 0.970451
Target:  5'- cGGugGUCguugucgcUGCCGU-GUCCG-CGCUUu -3'
miRNA:   3'- -CCugCAGa-------ACGGCAgCAGGCaGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 169672 0.67 0.967596
Target:  5'- aGGACGgc--GCCGUgG-CCGUUGCCg -3'
miRNA:   3'- -CCUGCagaaCGGCAgCaGGCAGUGGg -5'
29810 3' -55.3 NC_006273.1 + 162977 0.77 0.530237
Target:  5'- cGGugGUUUcgucGCCGUCGUCgaCGUCGCCg -3'
miRNA:   3'- -CCugCAGAa---CGGCAGCAG--GCAGUGGg -5'
29810 3' -55.3 NC_006273.1 + 161647 0.67 0.96455
Target:  5'- cGGGCcUCg-GCCGcCG-CCGcCACCCa -3'
miRNA:   3'- -CCUGcAGaaCGGCaGCaGGCaGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 157150 0.66 0.983911
Target:  5'- aGGcUGUaaccaacgUGCUGUCGcCCGUCuuuCCCg -3'
miRNA:   3'- -CCuGCAga------ACGGCAGCaGGCAGu--GGG- -5'
29810 3' -55.3 NC_006273.1 + 154113 0.71 0.852325
Target:  5'- cGGACGcCauacGCCGU-GUCUGUCACgCCg -3'
miRNA:   3'- -CCUGCaGaa--CGGCAgCAGGCAGUG-GG- -5'
29810 3' -55.3 NC_006273.1 + 152454 0.67 0.973121
Target:  5'- cGGAUGUgCUUGCCG-CGcagCUG-CGCCUc -3'
miRNA:   3'- -CCUGCA-GAACGGCaGCa--GGCaGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 140532 0.7 0.900065
Target:  5'- gGGGCGUCgc-CCGUCcccaccaCCGUCcACCCg -3'
miRNA:   3'- -CCUGCAGaacGGCAGca-----GGCAG-UGGG- -5'
29810 3' -55.3 NC_006273.1 + 139669 0.7 0.887429
Target:  5'- cGGACGUggCUUGUgGgacgggCG-CCGUCACUCg -3'
miRNA:   3'- -CCUGCA--GAACGgCa-----GCaGGCAGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 138888 0.69 0.932848
Target:  5'- gGGAUgaugaaccaaGUCUUGCCGUgaCGUCgCGgCACCa -3'
miRNA:   3'- -CCUG----------CAGAACGGCA--GCAG-GCaGUGGg -5'
29810 3' -55.3 NC_006273.1 + 137634 1.15 0.003186
Target:  5'- gGGACGUCUUGCCGUCGUCCGUCACCCg -3'
miRNA:   3'- -CCUGCAGAACGGCAGCAGGCAGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 137487 0.69 0.932848
Target:  5'- cGGGCGgcuUUGCCGUCucuucgCgCGUCACUCu -3'
miRNA:   3'- -CCUGCag-AACGGCAGca----G-GCAGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 133728 0.66 0.981687
Target:  5'- uGGCGUUggccgaguagcgUGCCGUCGUgCCuUCGgCCa -3'
miRNA:   3'- cCUGCAGa-----------ACGGCAGCA-GGcAGUgGG- -5'
29810 3' -55.3 NC_006273.1 + 133574 0.66 0.980082
Target:  5'- cGAuCGUCUcguuucugccgaUGCCGgCGUCaGUCGCCg -3'
miRNA:   3'- cCU-GCAGA------------ACGGCaGCAGgCAGUGGg -5'
29810 3' -55.3 NC_006273.1 + 129669 0.71 0.829046
Target:  5'- aGGACGcccgCUU-CUGUCGUCCGcgACCCg -3'
miRNA:   3'- -CCUGCa---GAAcGGCAGCAGGCagUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.