miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29810 3' -55.3 NC_006273.1 + 38320 0.68 0.946315
Target:  5'- uGAcCGUCgccgUGUCGUCG-CCGcCACCg -3'
miRNA:   3'- cCU-GCAGa---ACGGCAGCaGGCaGUGGg -5'
29810 3' -55.3 NC_006273.1 + 87575 0.69 0.921203
Target:  5'- gGGGCuGUUgcUGCUGUugaugaugcgacgcCGUCCGUCGCCg -3'
miRNA:   3'- -CCUG-CAGa-ACGGCA--------------GCAGGCAGUGGg -5'
29810 3' -55.3 NC_006273.1 + 177019 0.69 0.922787
Target:  5'- uGGCGUCUuccacgcugaucUGCaCGUU-UCCGUCGCUCg -3'
miRNA:   3'- cCUGCAGA------------ACG-GCAGcAGGCAGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 124028 0.69 0.922787
Target:  5'- cGGCGUUUucaggaggagacUGUCGUCGUCgGUacuggcgaCACCCa -3'
miRNA:   3'- cCUGCAGA------------ACGGCAGCAGgCA--------GUGGG- -5'
29810 3' -55.3 NC_006273.1 + 47906 0.69 0.932848
Target:  5'- -cGCGUCUUcGUCGUCGUCCucagCAUCUc -3'
miRNA:   3'- ccUGCAGAA-CGGCAGCAGGca--GUGGG- -5'
29810 3' -55.3 NC_006273.1 + 138888 0.69 0.932848
Target:  5'- gGGAUgaugaaccaaGUCUUGCCGUgaCGUCgCGgCACCa -3'
miRNA:   3'- -CCUG----------CAGAACGGCA--GCAG-GCaGUGGg -5'
29810 3' -55.3 NC_006273.1 + 137487 0.69 0.932848
Target:  5'- cGGGCGgcuUUGCCGUCucuucgCgCGUCACUCu -3'
miRNA:   3'- -CCUGCag-AACGGCAGca----G-GCAGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 197976 0.68 0.937553
Target:  5'- cGACGaaUUGCCGUCGcgCC--CACCCc -3'
miRNA:   3'- cCUGCagAACGGCAGCa-GGcaGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 221561 0.68 0.942042
Target:  5'- --cCGUCggucCCGaCGUCCGUCGCCa -3'
miRNA:   3'- ccuGCAGaac-GGCaGCAGGCAGUGGg -5'
29810 3' -55.3 NC_006273.1 + 67109 0.7 0.890022
Target:  5'- cGACGUUUUuugacGCCGUCaGUCUGUuauugcagcaacugcCACCCg -3'
miRNA:   3'- cCUGCAGAA-----CGGCAG-CAGGCA---------------GUGGG- -5'
29810 3' -55.3 NC_006273.1 + 139669 0.7 0.887429
Target:  5'- cGGACGUggCUUGUgGgacgggCG-CCGUCACUCg -3'
miRNA:   3'- -CCUGCA--GAACGgCa-----GCaGGCAGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 54389 0.71 0.866947
Target:  5'- cGugGUCUccUCGUCGUCCGacucggUACCCa -3'
miRNA:   3'- cCugCAGAacGGCAGCAGGCa-----GUGGG- -5'
29810 3' -55.3 NC_006273.1 + 96949 0.75 0.626622
Target:  5'- gGGACGUa--GCCGgCGUCCGgCACCUa -3'
miRNA:   3'- -CCUGCAgaaCGGCaGCAGGCaGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 116081 0.75 0.655895
Target:  5'- cGGCGUCUUGCgacuaagcacggCGUgGUCCGagaCACCCa -3'
miRNA:   3'- cCUGCAGAACG------------GCAgCAGGCa--GUGGG- -5'
29810 3' -55.3 NC_006273.1 + 213858 0.72 0.787083
Target:  5'- cGACGguggGUCGUCGUCCcGUC-CCCg -3'
miRNA:   3'- cCUGCagaaCGGCAGCAGG-CAGuGGG- -5'
29810 3' -55.3 NC_006273.1 + 85758 0.72 0.812701
Target:  5'- aGcCGUUUucgcUGCCGUCG-CCGUCcuGCCCa -3'
miRNA:   3'- cCuGCAGA----ACGGCAGCaGGCAG--UGGG- -5'
29810 3' -55.3 NC_006273.1 + 129669 0.71 0.829046
Target:  5'- aGGACGcccgCUU-CUGUCGUCCGcgACCCg -3'
miRNA:   3'- -CCUGCa---GAAcGGCAGCAGGCagUGGG- -5'
29810 3' -55.3 NC_006273.1 + 38377 0.71 0.829046
Target:  5'- cGGAgcugcUGUUaccGCCGcCGUCCGUCGCCg -3'
miRNA:   3'- -CCU-----GCAGaa-CGGCaGCAGGCAGUGGg -5'
29810 3' -55.3 NC_006273.1 + 98550 0.71 0.85973
Target:  5'- gGGACGUCgggGCCc---UCCGUCGCaCCg -3'
miRNA:   3'- -CCUGCAGaa-CGGcagcAGGCAGUG-GG- -5'
29810 3' -55.3 NC_006273.1 + 234596 0.71 0.85973
Target:  5'- cGGACGgCU--CCGUCGUCCGUgUGCCa -3'
miRNA:   3'- -CCUGCaGAacGGCAGCAGGCA-GUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.