miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29810 3' -55.3 NC_006273.1 + 137634 1.15 0.003186
Target:  5'- gGGACGUCUUGCCGUCGUCCGUCACCCg -3'
miRNA:   3'- -CCUGCAGAACGGCAGCAGGCAGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 161647 0.67 0.96455
Target:  5'- cGGGCcUCg-GCCGcCG-CCGcCACCCa -3'
miRNA:   3'- -CCUGcAGaaCGGCaGCaGGCaGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 47650 0.67 0.967596
Target:  5'- uGGACGaUC-UGCCGcugaaCGUCgGgUUACCCa -3'
miRNA:   3'- -CCUGC-AGaACGGCa----GCAGgC-AGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 177568 0.66 0.985439
Target:  5'- cGGGCGUCUUcgcagcguucccgGUCGUCGUgUGU-GCUCu -3'
miRNA:   3'- -CCUGCAGAA-------------CGGCAGCAgGCAgUGGG- -5'
29810 3' -55.3 NC_006273.1 + 154113 0.71 0.852325
Target:  5'- cGGACGcCauacGCCGU-GUCUGUCACgCCg -3'
miRNA:   3'- -CCUGCaGaa--CGGCAgCAGGCAGUG-GG- -5'
29810 3' -55.3 NC_006273.1 + 39704 0.71 0.85973
Target:  5'- cGGACGgCU--CCGUCGUCCGUgUGCCa -3'
miRNA:   3'- -CCUGCaGAacGGCAGCAGGCA-GUGGg -5'
29810 3' -55.3 NC_006273.1 + 27225 0.69 0.91743
Target:  5'- cGcCGUUUUGCUGuccUCGUCCGggucuaCGCCCu -3'
miRNA:   3'- cCuGCAGAACGGC---AGCAGGCa-----GUGGG- -5'
29810 3' -55.3 NC_006273.1 + 206308 0.69 0.927927
Target:  5'- cGG-UGUUUUGCCGUCGuuuuuuuuuUCCGgaucgGCCCg -3'
miRNA:   3'- -CCuGCAGAACGGCAGC---------AGGCag---UGGG- -5'
29810 3' -55.3 NC_006273.1 + 213139 0.68 0.942042
Target:  5'- -cGCGUCgcucGCCGgCGcCCGUCAUCUg -3'
miRNA:   3'- ccUGCAGaa--CGGCaGCaGGCAGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 83381 0.67 0.96131
Target:  5'- gGGccACGUCgggcUGCUGcCG-CCGcCACCCg -3'
miRNA:   3'- -CC--UGCAGa---ACGGCaGCaGGCaGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 25221 0.68 0.946315
Target:  5'- cGuCGUCaacGCCGUUGUCCacccucUCGCCCu -3'
miRNA:   3'- cCuGCAGaa-CGGCAGCAGGc-----AGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 72464 0.69 0.932848
Target:  5'- --cCGUCggUGCCGgcggccaCGUCCGUCACg- -3'
miRNA:   3'- ccuGCAGa-ACGGCa------GCAGGCAGUGgg -5'
29810 3' -55.3 NC_006273.1 + 17185 0.77 0.568351
Target:  5'- cGGuCGUCc-GCCGUCGgCCGcCGCCCa -3'
miRNA:   3'- -CCuGCAGaaCGGCAGCaGGCaGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 38736 0.68 0.950376
Target:  5'- cGGCGUCUguagUGCCaccGUCGUgCCGgccCACCg -3'
miRNA:   3'- cCUGCAGA----ACGG---CAGCA-GGCa--GUGGg -5'
29810 3' -55.3 NC_006273.1 + 198129 0.73 0.731701
Target:  5'- cGGCGUCUUccuccucGUCGUCGccgCCGUCGCgCCu -3'
miRNA:   3'- cCUGCAGAA-------CGGCAGCa--GGCAGUG-GG- -5'
29810 3' -55.3 NC_006273.1 + 37138 0.69 0.927927
Target:  5'- cGGAgGUgCUggcgGCCGUgGcCUGUgGCCCg -3'
miRNA:   3'- -CCUgCA-GAa---CGGCAgCaGGCAgUGGG- -5'
29810 3' -55.3 NC_006273.1 + 183753 0.67 0.95787
Target:  5'- cGGGugcUGUCcgcGCCGcCGagccugCCGUCGCCCg -3'
miRNA:   3'- -CCU---GCAGaa-CGGCaGCa-----GGCAGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 171011 0.67 0.967596
Target:  5'- cGGACGUCgcgccUGCCGUUGauucUUCGUgAUCg -3'
miRNA:   3'- -CCUGCAGa----ACGGCAGC----AGGCAgUGGg -5'
29810 3' -55.3 NC_006273.1 + 11889 0.73 0.77828
Target:  5'- -cGCGUCUgggGCCGUUGUUCGgaggACCCu -3'
miRNA:   3'- ccUGCAGAa--CGGCAGCAGGCag--UGGG- -5'
29810 3' -55.3 NC_006273.1 + 140532 0.7 0.900065
Target:  5'- gGGGCGUCgc-CCGUCcccaccaCCGUCcACCCg -3'
miRNA:   3'- -CCUGCAGaacGGCAGca-----GGCAG-UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.