miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29810 5' -51.5 NC_006273.1 + 140958 0.66 0.998673
Target:  5'- -cGAGCGGggGGAGGGCagggacccccGGCCGAgGuCCg -3'
miRNA:   3'- cuCUUGCUa-CCUCCUG----------CUGGUUgU-GG- -5'
29810 5' -51.5 NC_006273.1 + 57023 0.66 0.998673
Target:  5'- uGGGACGAggaGGAGGaggcguccGCGGCCcgcgAGCGCa -3'
miRNA:   3'- cUCUUGCUa--CCUCC--------UGCUGG----UUGUGg -5'
29810 5' -51.5 NC_006273.1 + 37743 0.66 0.998673
Target:  5'- -uGAGCGGUGGGGGcauCGuugCAGCGuCCg -3'
miRNA:   3'- cuCUUGCUACCUCCu--GCug-GUUGU-GG- -5'
29810 5' -51.5 NC_006273.1 + 198924 0.66 0.998673
Target:  5'- uGAGGGCGcc-GAGGACaaGACCuucuuuCACCg -3'
miRNA:   3'- -CUCUUGCuacCUCCUG--CUGGuu----GUGG- -5'
29810 5' -51.5 NC_006273.1 + 45931 0.66 0.998673
Target:  5'- cGAGGGaGA-GGAGGACGACgAcgaGCuCCg -3'
miRNA:   3'- -CUCUUgCUaCCUCCUGCUGgU---UGuGG- -5'
29810 5' -51.5 NC_006273.1 + 214384 0.66 0.998673
Target:  5'- cAGAGCGAgcguGAGGAaCGAaagCAGCAUCa -3'
miRNA:   3'- cUCUUGCUac--CUCCU-GCUg--GUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 128096 0.66 0.998673
Target:  5'- cAGGGCGcgGGcu--CGugCAGCACCg -3'
miRNA:   3'- cUCUUGCuaCCuccuGCugGUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 73299 0.66 0.99841
Target:  5'- cGGAGCGugucGGAGacGACGauugGCCAugACCg -3'
miRNA:   3'- cUCUUGCua--CCUC--CUGC----UGGUugUGG- -5'
29810 5' -51.5 NC_006273.1 + 212087 0.66 0.99841
Target:  5'- cAGAGUGAUGGcuGA-GACCAACACg -3'
miRNA:   3'- cUCUUGCUACCucCUgCUGGUUGUGg -5'
29810 5' -51.5 NC_006273.1 + 19761 0.66 0.99841
Target:  5'- gGAGGACGAguggcuacgGGAGauacaaggagcGACGuACCAGCuguCCa -3'
miRNA:   3'- -CUCUUGCUa--------CCUC-----------CUGC-UGGUUGu--GG- -5'
29810 5' -51.5 NC_006273.1 + 140041 0.66 0.99841
Target:  5'- uGGGGACGGugauugUGGAGGGgCGuACUGACGgCa -3'
miRNA:   3'- -CUCUUGCU------ACCUCCU-GC-UGGUUGUgG- -5'
29810 5' -51.5 NC_006273.1 + 142414 0.66 0.99841
Target:  5'- gGAGGaauccgccacgGCGGUGGAGGcCGACUc-CACg -3'
miRNA:   3'- -CUCU-----------UGCUACCUCCuGCUGGuuGUGg -5'
29810 5' -51.5 NC_006273.1 + 147322 0.66 0.99841
Target:  5'- gGAGAacuuGCGAcgcgUGcuGGACG-CCGACGCCc -3'
miRNA:   3'- -CUCU----UGCU----ACcuCCUGCuGGUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 31329 0.66 0.99841
Target:  5'- ---cACGAaaaGGAgugacGGACGGCCAguACGCCa -3'
miRNA:   3'- cucuUGCUa--CCU-----CCUGCUGGU--UGUGG- -5'
29810 5' -51.5 NC_006273.1 + 104337 0.66 0.998105
Target:  5'- aGAGGGgGAUGGGcuGGcgcGCGGCCAgguaGCGCg -3'
miRNA:   3'- -CUCUUgCUACCU--CC---UGCUGGU----UGUGg -5'
29810 5' -51.5 NC_006273.1 + 8378 0.66 0.998105
Target:  5'- aGAGAcAUGGuuUGGGGGG-GACCGGCGgCg -3'
miRNA:   3'- -CUCU-UGCU--ACCUCCUgCUGGUUGUgG- -5'
29810 5' -51.5 NC_006273.1 + 134937 0.66 0.998105
Target:  5'- cAGGACGGcu-GGGGCGACCAuuGCAgCa -3'
miRNA:   3'- cUCUUGCUaccUCCUGCUGGU--UGUgG- -5'
29810 5' -51.5 NC_006273.1 + 215973 0.66 0.998105
Target:  5'- cAGAuCGGuuUGGGGGAUGAgcaCGAUGCCg -3'
miRNA:   3'- cUCUuGCU--ACCUCCUGCUg--GUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 159303 0.66 0.998105
Target:  5'- cAGAGCGAgaagGGA-GACGACaGACAUa -3'
miRNA:   3'- cUCUUGCUa---CCUcCUGCUGgUUGUGg -5'
29810 5' -51.5 NC_006273.1 + 185029 0.66 0.998072
Target:  5'- aGGGGAUGGUaacuugcucucccucGGCGACCAACACCg -3'
miRNA:   3'- -CUCUUGCUAccuc-----------CUGCUGGUUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.