miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29810 5' -51.5 NC_006273.1 + 163910 0.66 0.997751
Target:  5'- --cAGCGA-GGAGGcuGCGAUCGcCGCCg -3'
miRNA:   3'- cucUUGCUaCCUCC--UGCUGGUuGUGG- -5'
29810 5' -51.5 NC_006273.1 + 104337 0.66 0.998105
Target:  5'- aGAGGGgGAUGGGcuGGcgcGCGGCCAgguaGCGCg -3'
miRNA:   3'- -CUCUUgCUACCU--CC---UGCUGGU----UGUGg -5'
29810 5' -51.5 NC_006273.1 + 8378 0.66 0.998105
Target:  5'- aGAGAcAUGGuuUGGGGGG-GACCGGCGgCg -3'
miRNA:   3'- -CUCU-UGCU--ACCUCCUgCUGGUUGUgG- -5'
29810 5' -51.5 NC_006273.1 + 95301 0.66 0.997751
Target:  5'- cGGGGuCGAcGGuGGGCcGCCAugACACCu -3'
miRNA:   3'- -CUCUuGCUaCCuCCUGcUGGU--UGUGG- -5'
29810 5' -51.5 NC_006273.1 + 34028 0.66 0.996829
Target:  5'- cGGGAAUGGUgggacgccaccgcGGAGGGCGACaaaGAggagugguCGCCg -3'
miRNA:   3'- -CUCUUGCUA-------------CCUCCUGCUGg--UU--------GUGG- -5'
29810 5' -51.5 NC_006273.1 + 164545 0.66 0.996879
Target:  5'- gGAGGGCGgcGGcGGuCGGCC--CGCCa -3'
miRNA:   3'- -CUCUUGCuaCCuCCuGCUGGuuGUGG- -5'
29810 5' -51.5 NC_006273.1 + 185029 0.66 0.998072
Target:  5'- aGGGGAUGGUaacuugcucucccucGGCGACCAACACCg -3'
miRNA:   3'- -CUCUUGCUAccuc-----------CUGCUGGUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 45931 0.66 0.998673
Target:  5'- cGAGGGaGA-GGAGGACGACgAcgaGCuCCg -3'
miRNA:   3'- -CUCUUgCUaCCUCCUGCUGgU---UGuGG- -5'
29810 5' -51.5 NC_006273.1 + 128096 0.66 0.998673
Target:  5'- cAGGGCGcgGGcu--CGugCAGCACCg -3'
miRNA:   3'- cUCUUGCuaCCuccuGCugGUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 110867 0.66 0.997345
Target:  5'- -uGGGCGGUGGcacaguGGugGGCUguuCACCu -3'
miRNA:   3'- cuCUUGCUACCu-----CCugCUGGuu-GUGG- -5'
29810 5' -51.5 NC_006273.1 + 73299 0.66 0.99841
Target:  5'- cGGAGCGugucGGAGacGACGauugGCCAugACCg -3'
miRNA:   3'- cUCUUGCua--CCUC--CUGC----UGGUugUGG- -5'
29810 5' -51.5 NC_006273.1 + 142414 0.66 0.99841
Target:  5'- gGAGGaauccgccacgGCGGUGGAGGcCGACUc-CACg -3'
miRNA:   3'- -CUCU-----------UGCUACCUCCuGCUGGuuGUGg -5'
29810 5' -51.5 NC_006273.1 + 159303 0.66 0.998105
Target:  5'- cAGAGCGAgaagGGA-GACGACaGACAUa -3'
miRNA:   3'- cUCUUGCUa---CCUcCUGCUGgUUGUGg -5'
29810 5' -51.5 NC_006273.1 + 31329 0.66 0.99841
Target:  5'- ---cACGAaaaGGAgugacGGACGGCCAguACGCCa -3'
miRNA:   3'- cucuUGCUa--CCU-----CCUGCUGGU--UGUGG- -5'
29810 5' -51.5 NC_006273.1 + 214384 0.66 0.998673
Target:  5'- cAGAGCGAgcguGAGGAaCGAaagCAGCAUCa -3'
miRNA:   3'- cUCUUGCUac--CUCCU-GCUg--GUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 202193 0.66 0.996879
Target:  5'- cGGAACGGaGGAGGcuuuCG-CC-ACACCu -3'
miRNA:   3'- cUCUUGCUaCCUCCu---GCuGGuUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 136097 0.66 0.996879
Target:  5'- cGAGGACGccGUGGGcGGCGAUC-GCGCUu -3'
miRNA:   3'- -CUCUUGC--UACCUcCUGCUGGuUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 19761 0.66 0.99841
Target:  5'- gGAGGACGAguggcuacgGGAGauacaaggagcGACGuACCAGCuguCCa -3'
miRNA:   3'- -CUCUUGCUa--------CCUC-----------CUGC-UGGUUGu--GG- -5'
29810 5' -51.5 NC_006273.1 + 67431 0.66 0.996879
Target:  5'- aGAGGccggcaagcucACGGuaacuucugUGGAGGACGugCAGCGu- -3'
miRNA:   3'- -CUCU-----------UGCU---------ACCUCCUGCugGUUGUgg -5'
29810 5' -51.5 NC_006273.1 + 51578 0.66 0.996879
Target:  5'- gGAGGACGGaGGGGuGGCGG-CGGCAgCg -3'
miRNA:   3'- -CUCUUGCUaCCUC-CUGCUgGUUGUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.