miRNA display CGI


Results 21 - 40 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29810 5' -51.5 NC_006273.1 + 51578 0.66 0.996879
Target:  5'- gGAGGACGGaGGGGuGGCGG-CGGCAgCg -3'
miRNA:   3'- -CUCUUGCUaCCUC-CUGCUgGUUGUgG- -5'
29810 5' -51.5 NC_006273.1 + 34028 0.66 0.996829
Target:  5'- cGGGAAUGGUgggacgccaccgcGGAGGGCGACaaaGAggagugguCGCCg -3'
miRNA:   3'- -CUCUUGCUA-------------CCUCCUGCUGg--UU--------GUGG- -5'
29810 5' -51.5 NC_006273.1 + 37743 0.66 0.998673
Target:  5'- -uGAGCGGUGGGGGcauCGuugCAGCGuCCg -3'
miRNA:   3'- cuCUUGCUACCUCCu--GCug-GUUGU-GG- -5'
29810 5' -51.5 NC_006273.1 + 49673 0.66 0.997345
Target:  5'- cGAcAGCG-UGGAcgacuGGGCGACCAccucgguuuuuuACGCCa -3'
miRNA:   3'- -CUcUUGCuACCU-----CCUGCUGGU------------UGUGG- -5'
29810 5' -51.5 NC_006273.1 + 67431 0.66 0.996879
Target:  5'- aGAGGccggcaagcucACGGuaacuucugUGGAGGACGugCAGCGu- -3'
miRNA:   3'- -CUCU-----------UGCU---------ACCUCCUGCugGUUGUgg -5'
29810 5' -51.5 NC_006273.1 + 149761 0.66 0.997751
Target:  5'- cAGAAgGucucGGAGGugGGCUAugGCa -3'
miRNA:   3'- cUCUUgCua--CCUCCugCUGGUugUGg -5'
29810 5' -51.5 NC_006273.1 + 140041 0.66 0.99841
Target:  5'- uGGGGACGGugauugUGGAGGGgCGuACUGACGgCa -3'
miRNA:   3'- -CUCUUGCU------ACCUCCU-GC-UGGUUGUgG- -5'
29810 5' -51.5 NC_006273.1 + 57023 0.66 0.998673
Target:  5'- uGGGACGAggaGGAGGaggcguccGCGGCCcgcgAGCGCa -3'
miRNA:   3'- cUCUUGCUa--CCUCC--------UGCUGG----UUGUGg -5'
29810 5' -51.5 NC_006273.1 + 44268 0.66 0.996879
Target:  5'- --cGAUGAgagGGAGGAUGGCCGu--CCg -3'
miRNA:   3'- cucUUGCUa--CCUCCUGCUGGUuguGG- -5'
29810 5' -51.5 NC_006273.1 + 163910 0.66 0.997751
Target:  5'- --cAGCGA-GGAGGcuGCGAUCGcCGCCg -3'
miRNA:   3'- cucUUGCUaCCUCC--UGCUGGUuGUGG- -5'
29810 5' -51.5 NC_006273.1 + 136097 0.66 0.996879
Target:  5'- cGAGGACGccGUGGGcGGCGAUC-GCGCUu -3'
miRNA:   3'- -CUCUUGC--UACCUcCUGCUGGuUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 202193 0.66 0.996879
Target:  5'- cGGAACGGaGGAGGcuuuCG-CC-ACACCu -3'
miRNA:   3'- cUCUUGCUaCCUCCu---GCuGGuUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 110867 0.66 0.997345
Target:  5'- -uGGGCGGUGGcacaguGGugGGCUguuCACCu -3'
miRNA:   3'- cuCUUGCUACCu-----CCugCUGGuu-GUGG- -5'
29810 5' -51.5 NC_006273.1 + 164545 0.66 0.996879
Target:  5'- gGAGGGCGgcGGcGGuCGGCC--CGCCa -3'
miRNA:   3'- -CUCUUGCuaCCuCCuGCUGGuuGUGG- -5'
29810 5' -51.5 NC_006273.1 + 95301 0.66 0.997751
Target:  5'- cGGGGuCGAcGGuGGGCcGCCAugACACCu -3'
miRNA:   3'- -CUCUuGCUaCCuCCUGcUGGU--UGUGG- -5'
29810 5' -51.5 NC_006273.1 + 21660 0.67 0.995744
Target:  5'- cGAGAccACGGcgcUGGuGGccgacgugcACGACCuGCGCCa -3'
miRNA:   3'- -CUCU--UGCU---ACCuCC---------UGCUGGuUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 195172 0.67 0.995061
Target:  5'- --cGGC-AUGGGGGGCG-CCAaaACGCCg -3'
miRNA:   3'- cucUUGcUACCUCCUGCuGGU--UGUGG- -5'
29810 5' -51.5 NC_006273.1 + 71940 0.67 0.99461
Target:  5'- --uGACGAgUGGcGGACaugcgacugcuggggGGCCAACGCCg -3'
miRNA:   3'- cucUUGCU-ACCuCCUG---------------CUGGUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 82918 0.67 0.995061
Target:  5'- cGGAGCGGcUGGAGGcgcagcugcGCGGCaAGCACa -3'
miRNA:   3'- cUCUUGCU-ACCUCC---------UGCUGgUUGUGg -5'
29810 5' -51.5 NC_006273.1 + 145578 0.67 0.995061
Target:  5'- cGGGggUGGUGGAcgGGACGugaGCgGGgGCCc -3'
miRNA:   3'- -CUCuuGCUACCU--CCUGC---UGgUUgUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.