Results 1 - 20 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29810 | 5' | -51.5 | NC_006273.1 | + | 137679 | 1.13 | 0.007163 |
Target: 5'- aGAGAACGAUGGAGGACGACCAACACCg -3' miRNA: 3'- -CUCUUGCUACCUCCUGCUGGUUGUGG- -5' |
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29810 | 5' | -51.5 | NC_006273.1 | + | 38516 | 0.81 | 0.496945 |
Target: 5'- gGAGGACGAaGGAggggagacgaGGACGACgGGCACCa -3' miRNA: 3'- -CUCUUGCUaCCU----------CCUGCUGgUUGUGG- -5' |
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29810 | 5' | -51.5 | NC_006273.1 | + | 94851 | 0.81 | 0.525951 |
Target: 5'- -uGGACGGUGGugGGGACGGgCGACGCCc -3' miRNA: 3'- cuCUUGCUACC--UCCUGCUgGUUGUGG- -5' |
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29810 | 5' | -51.5 | NC_006273.1 | + | 141042 | 0.81 | 0.516207 |
Target: 5'- cAGGGCGGUGGGacgggcccgcGGACgGACCGGCGCCg -3' miRNA: 3'- cUCUUGCUACCU----------CCUG-CUGGUUGUGG- -5' |
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29810 | 5' | -51.5 | NC_006273.1 | + | 212935 | 0.79 | 0.605895 |
Target: 5'- cGGGuACGAUGGAGGAUagGGCUGGCACUa -3' miRNA: 3'- -CUCuUGCUACCUCCUG--CUGGUUGUGG- -5' |
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29810 | 5' | -51.5 | NC_006273.1 | + | 108509 | 0.79 | 0.646535 |
Target: 5'- -cGAGCuGGUGGAGGACGucgccACCGACGCa -3' miRNA: 3'- cuCUUG-CUACCUCCUGC-----UGGUUGUGg -5' |
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29810 | 5' | -51.5 | NC_006273.1 | + | 136678 | 0.78 | 0.676924 |
Target: 5'- uGAGGACGA-GGAGacGACGACCGGCcggucGCCg -3' miRNA: 3'- -CUCUUGCUaCCUC--CUGCUGGUUG-----UGG- -5' |
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29810 | 5' | -51.5 | NC_006273.1 | + | 71642 | 0.78 | 0.685988 |
Target: 5'- gGAGGACGA-GGAGGACGucgcugcuaaaccGCCGcGCGCCu -3' miRNA: 3'- -CUCUUGCUaCCUCCUGC-------------UGGU-UGUGG- -5' |
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29810 | 5' | -51.5 | NC_006273.1 | + | 85330 | 0.77 | 0.716893 |
Target: 5'- uGGaAGCGGUGGAGGACGACaauaacucucGCGCCc -3' miRNA: 3'- cUC-UUGCUACCUCCUGCUGgu--------UGUGG- -5' |
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29810 | 5' | -51.5 | NC_006273.1 | + | 20900 | 0.77 | 0.706986 |
Target: 5'- gGAGAACGA-GGaAGGugGACCGugugaauCGCCg -3' miRNA: 3'- -CUCUUGCUaCC-UCCugCUGGUu------GUGG- -5' |
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29810 | 5' | -51.5 | NC_006273.1 | + | 207461 | 0.76 | 0.792821 |
Target: 5'- gGGGGACGAUGGGuGGugGcuacgaGCCAcCGCCa -3' miRNA: 3'- -CUCUUGCUACCU-CCugC------UGGUuGUGG- -5' |
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29810 | 5' | -51.5 | NC_006273.1 | + | 164679 | 0.74 | 0.867171 |
Target: 5'- -cGAACG-UGGAGGGCGGuCgCAGCACg -3' miRNA: 3'- cuCUUGCuACCUCCUGCU-G-GUUGUGg -5' |
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29810 | 5' | -51.5 | NC_006273.1 | + | 140292 | 0.74 | 0.867171 |
Target: 5'- gGGGAGCGucacGGGAcCGGCCAACGCCc -3' miRNA: 3'- -CUCUUGCuaccUCCU-GCUGGUUGUGG- -5' |
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29810 | 5' | -51.5 | NC_006273.1 | + | 83692 | 0.74 | 0.874476 |
Target: 5'- --uGGCGGUGGAGGACaaccgccugguGGCCAACAgCu -3' miRNA: 3'- cucUUGCUACCUCCUG-----------CUGGUUGUgG- -5' |
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29810 | 5' | -51.5 | NC_006273.1 | + | 44706 | 0.74 | 0.873755 |
Target: 5'- uGAGAcgacgccGCuGGUGGAGGACG-CCGAacCGCCg -3' miRNA: 3'- -CUCU-------UG-CUACCUCCUGCuGGUU--GUGG- -5' |
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29810 | 5' | -51.5 | NC_006273.1 | + | 229837 | 0.74 | 0.859657 |
Target: 5'- cGGGAACGgcGaGAGGACGAUCuucGCACg -3' miRNA: 3'- -CUCUUGCuaC-CUCCUGCUGGu--UGUGg -5' |
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29810 | 5' | -51.5 | NC_006273.1 | + | 141169 | 0.73 | 0.913666 |
Target: 5'- cGGAcuGCGccGGGGGGCGGCgGGCACg -3' miRNA: 3'- cUCU--UGCuaCCUCCUGCUGgUUGUGg -5' |
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29810 | 5' | -51.5 | NC_006273.1 | + | 163802 | 0.73 | 0.881567 |
Target: 5'- cGGGAcccACGGUGGccaacaagcGGGACGAaaAACACCg -3' miRNA: 3'- -CUCU---UGCUACC---------UCCUGCUggUUGUGG- -5' |
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29810 | 5' | -51.5 | NC_006273.1 | + | 144206 | 0.72 | 0.924885 |
Target: 5'- -cGAGCGGUGc--GACGACCGGCACg -3' miRNA: 3'- cuCUUGCUACcucCUGCUGGUUGUGg -5' |
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29810 | 5' | -51.5 | NC_006273.1 | + | 122614 | 0.72 | 0.939946 |
Target: 5'- cAGcGCGAUGGAa-GCGcCCAGCACCg -3' miRNA: 3'- cUCuUGCUACCUccUGCuGGUUGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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