miRNA display CGI


Results 21 - 40 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29810 5' -51.5 NC_006273.1 + 122614 0.72 0.939946
Target:  5'- cAGcGCGAUGGAa-GCGcCCAGCACCg -3'
miRNA:   3'- cUCuUGCUACCUccUGCuGGUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 105344 0.72 0.939946
Target:  5'- aGAGGGCGAcgaGGAGGAugaagUGACCGugauguCGCCg -3'
miRNA:   3'- -CUCUUGCUa--CCUCCU-----GCUGGUu-----GUGG- -5'
29810 5' -51.5 NC_006273.1 + 198005 0.71 0.943156
Target:  5'- -uGAGCGuGUGGAGGACGggguggagcgggucGCCGAgACUa -3'
miRNA:   3'- cuCUUGC-UACCUCCUGC--------------UGGUUgUGG- -5'
29810 5' -51.5 NC_006273.1 + 101698 0.71 0.944497
Target:  5'- uGAGAccGCuGccGGGGGGCGggucACCGGCGCCg -3'
miRNA:   3'- -CUCU--UG-CuaCCUCCUGC----UGGUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 41992 0.71 0.948816
Target:  5'- uGGGGCGGUgaagaaggGGAGGACGACguucuCGCCa -3'
miRNA:   3'- cUCUUGCUA--------CCUCCUGCUGguu--GUGG- -5'
29810 5' -51.5 NC_006273.1 + 196625 0.71 0.952907
Target:  5'- cGGGAgcuGCGccGGcGGugGGCCGGCACg -3'
miRNA:   3'- -CUCU---UGCuaCCuCCugCUGGUUGUGg -5'
29810 5' -51.5 NC_006273.1 + 1733 0.71 0.952907
Target:  5'- cGGGAgcuGCGccGGcGGugGGCCGGCACg -3'
miRNA:   3'- -CUCU---UGCuaCCuCCugCUGGUUGUGg -5'
29810 5' -51.5 NC_006273.1 + 96230 0.71 0.956771
Target:  5'- --aAGCGAUGGAGGAcCGcACCcaaaguGCGCCc -3'
miRNA:   3'- cucUUGCUACCUCCU-GC-UGGu-----UGUGG- -5'
29810 5' -51.5 NC_006273.1 + 61714 0.71 0.956771
Target:  5'- gGAGAucggcGCGGUGGAugcccaGGACGugACCGcgaGCGCCg -3'
miRNA:   3'- -CUCU-----UGCUACCU------CCUGC--UGGU---UGUGG- -5'
29810 5' -51.5 NC_006273.1 + 144752 0.71 0.960413
Target:  5'- cAGAACGugcugcGGAGGcacgacgcgGCGGCCGugGCCu -3'
miRNA:   3'- cUCUUGCua----CCUCC---------UGCUGGUugUGG- -5'
29810 5' -51.5 NC_006273.1 + 211176 0.71 0.960413
Target:  5'- -uGAuUGGUGGA-GACGGCCGGCGCg -3'
miRNA:   3'- cuCUuGCUACCUcCUGCUGGUUGUGg -5'
29810 5' -51.5 NC_006273.1 + 135599 0.7 0.963838
Target:  5'- uGAGGGCGAgcUGGAagaGGACGAagacagugaCGACGCUa -3'
miRNA:   3'- -CUCUUGCU--ACCU---CCUGCUg--------GUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 115549 0.7 0.96705
Target:  5'- aGAGGAgGAUGGGGGG-GACCGggguggugguGCugCu -3'
miRNA:   3'- -CUCUUgCUACCUCCUgCUGGU----------UGugG- -5'
29810 5' -51.5 NC_006273.1 + 190062 0.7 0.96705
Target:  5'- --cGACGGcgGGGGGACGAacaccgUCGGCGCCg -3'
miRNA:   3'- cucUUGCUa-CCUCCUGCU------GGUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 132732 0.7 0.970055
Target:  5'- uGAGAGCGccGGGGaGACGA-CGACAgCa -3'
miRNA:   3'- -CUCUUGCuaCCUC-CUGCUgGUUGUgG- -5'
29810 5' -51.5 NC_006273.1 + 145688 0.7 0.970055
Target:  5'- -cGGACGAaggGGAGGACGAUgCGACGg- -3'
miRNA:   3'- cuCUUGCUa--CCUCCUGCUG-GUUGUgg -5'
29810 5' -51.5 NC_006273.1 + 195755 0.7 0.970055
Target:  5'- -uGGACGucGGAGGuguccgGCGGCCAugGCCc -3'
miRNA:   3'- cuCUUGCuaCCUCC------UGCUGGUugUGG- -5'
29810 5' -51.5 NC_006273.1 + 51119 0.7 0.970055
Target:  5'- aGGGGACGAcgaggcgGuGAGGGCuAUCGACGCCu -3'
miRNA:   3'- -CUCUUGCUa------C-CUCCUGcUGGUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 863 0.7 0.970055
Target:  5'- -uGGACGucGGAGGuguccgGCGGCCAugGCCc -3'
miRNA:   3'- cuCUUGCuaCCUCC------UGCUGGUugUGG- -5'
29810 5' -51.5 NC_006273.1 + 56133 0.7 0.972859
Target:  5'- --aAACGGgccgcGGAGGcgGCGACCGACGCg -3'
miRNA:   3'- cucUUGCUa----CCUCC--UGCUGGUUGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.