miRNA display CGI


Results 41 - 60 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29810 5' -51.5 NC_006273.1 + 83153 0.7 0.972859
Target:  5'- gGAG-AUGAUGGAGcagcACGACCGgggcagcgACGCCa -3'
miRNA:   3'- -CUCuUGCUACCUCc---UGCUGGU--------UGUGG- -5'
29810 5' -51.5 NC_006273.1 + 68030 0.7 0.972859
Target:  5'- gGAGGACugccggcaGGUGuGGGcuCGGCCAGCGCCg -3'
miRNA:   3'- -CUCUUG--------CUACcUCCu-GCUGGUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 87690 0.7 0.972859
Target:  5'- -cGggUGGUGGcGGugGugCAGCGgCg -3'
miRNA:   3'- cuCuuGCUACCuCCugCugGUUGUgG- -5'
29810 5' -51.5 NC_006273.1 + 163118 0.7 0.975468
Target:  5'- gGAGGAUGA-GGAGGgcuccggcugagGCGGCggaGGCACCa -3'
miRNA:   3'- -CUCUUGCUaCCUCC------------UGCUGg--UUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 68422 0.69 0.977889
Target:  5'- -uGAGCGgcGGAcuGGACGugaccacccCCGACGCCa -3'
miRNA:   3'- cuCUUGCuaCCU--CCUGCu--------GGUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 136057 0.69 0.977889
Target:  5'- -cGAGCGGagauGAGGACGAC--GCACCg -3'
miRNA:   3'- cuCUUGCUac--CUCCUGCUGguUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 37339 0.69 0.977889
Target:  5'- --uGGCGGcagcGGAGGugGGCCGGgGCCc -3'
miRNA:   3'- cucUUGCUa---CCUCCugCUGGUUgUGG- -5'
29810 5' -51.5 NC_006273.1 + 29431 0.69 0.977889
Target:  5'- cGAcGACGAUGGGGauaaggucGACgGGCCAGCGCa -3'
miRNA:   3'- -CUcUUGCUACCUC--------CUG-CUGGUUGUGg -5'
29810 5' -51.5 NC_006273.1 + 111305 0.69 0.979475
Target:  5'- cGAGGAUGAUgagguaggaggGGAGGccuggccgcauagcGCGGCC-GCGCCg -3'
miRNA:   3'- -CUCUUGCUA-----------CCUCC--------------UGCUGGuUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 156186 0.69 0.980129
Target:  5'- aGGAACGcgGGAGGGgGAUucggaggagagCAGCACg -3'
miRNA:   3'- cUCUUGCuaCCUCCUgCUG-----------GUUGUGg -5'
29810 5' -51.5 NC_006273.1 + 36542 0.69 0.980129
Target:  5'- cGGAGCGGaGGAGG-UGACCuGGCugCu -3'
miRNA:   3'- cUCUUGCUaCCUCCuGCUGG-UUGugG- -5'
29810 5' -51.5 NC_006273.1 + 127462 0.69 0.980129
Target:  5'- aGAGcaacuGCGGUGGuAGGGCG-CCAucaGCCa -3'
miRNA:   3'- -CUCu----UGCUACC-UCCUGCuGGUug-UGG- -5'
29810 5' -51.5 NC_006273.1 + 97407 0.69 0.982195
Target:  5'- aGAGAGCGGcccuacaucGGGGGGCGcUCGAgACCg -3'
miRNA:   3'- -CUCUUGCUa--------CCUCCUGCuGGUUgUGG- -5'
29810 5' -51.5 NC_006273.1 + 1254 0.69 0.984096
Target:  5'- cGGGGACGGggacGGGGGccuuucGCGGCgGACACg -3'
miRNA:   3'- -CUCUUGCUa---CCUCC------UGCUGgUUGUGg -5'
29810 5' -51.5 NC_006273.1 + 218207 0.69 0.984096
Target:  5'- -cGGcCGAcGGcGGACGACCGGCAUg -3'
miRNA:   3'- cuCUuGCUaCCuCCUGCUGGUUGUGg -5'
29810 5' -51.5 NC_006273.1 + 34933 0.69 0.984096
Target:  5'- uGGGuuAGCGGUGGAGGugGCGGCUGAU-CCa -3'
miRNA:   3'- -CUC--UUGCUACCUCC--UGCUGGUUGuGG- -5'
29810 5' -51.5 NC_006273.1 + 200645 0.69 0.984096
Target:  5'- cGAGuccGCGAgucucaGGAacaGGACGGCCAggaucgcgaGCACCa -3'
miRNA:   3'- -CUCu--UGCUa-----CCU---CCUGCUGGU---------UGUGG- -5'
29810 5' -51.5 NC_006273.1 + 41192 0.69 0.984096
Target:  5'- cGGGGACGGggacGGGGGccuuucGCGGCgGACACg -3'
miRNA:   3'- -CUCUUGCUa---CCUCC------UGCUGgUUGUGg -5'
29810 5' -51.5 NC_006273.1 + 148072 0.69 0.985838
Target:  5'- gGAGAuuu-UGGAGGcCGcACCGGCACUg -3'
miRNA:   3'- -CUCUugcuACCUCCuGC-UGGUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 140211 0.69 0.985838
Target:  5'- gGGGAGgGGagUGGGGGACcacgcccagGGCCAGCaaGCCg -3'
miRNA:   3'- -CUCUUgCU--ACCUCCUG---------CUGGUUG--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.