miRNA display CGI


Results 21 - 40 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29810 5' -51.5 NC_006273.1 + 95301 0.66 0.997751
Target:  5'- cGGGGuCGAcGGuGGGCcGCCAugACACCu -3'
miRNA:   3'- -CUCUuGCUaCCuCCUGcUGGU--UGUGG- -5'
29810 5' -51.5 NC_006273.1 + 149761 0.66 0.997751
Target:  5'- cAGAAgGucucGGAGGugGGCUAugGCa -3'
miRNA:   3'- cUCUUgCua--CCUCCugCUGGUugUGg -5'
29810 5' -51.5 NC_006273.1 + 101784 0.66 0.997751
Target:  5'- cAGAGCcaccagGGccGGCGACUGACGCCg -3'
miRNA:   3'- cUCUUGcua---CCucCUGCUGGUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 163910 0.66 0.997751
Target:  5'- --cAGCGA-GGAGGcuGCGAUCGcCGCCg -3'
miRNA:   3'- cucUUGCUaCCUCC--UGCUGGUuGUGG- -5'
29810 5' -51.5 NC_006273.1 + 110867 0.66 0.997345
Target:  5'- -uGGGCGGUGGcacaguGGugGGCUguuCACCu -3'
miRNA:   3'- cuCUUGCUACCu-----CCugCUGGuu-GUGG- -5'
29810 5' -51.5 NC_006273.1 + 86707 0.66 0.997345
Target:  5'- cGAGcccACGAUGucGGGCaGGCC-GCACCa -3'
miRNA:   3'- -CUCu--UGCUACcuCCUG-CUGGuUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 49673 0.66 0.997345
Target:  5'- cGAcAGCG-UGGAcgacuGGGCGACCAccucgguuuuuuACGCCa -3'
miRNA:   3'- -CUcUUGCuACCU-----CCUGCUGGU------------UGUGG- -5'
29810 5' -51.5 NC_006273.1 + 44268 0.66 0.996879
Target:  5'- --cGAUGAgagGGAGGAUGGCCGu--CCg -3'
miRNA:   3'- cucUUGCUa--CCUCCUGCUGGUuguGG- -5'
29810 5' -51.5 NC_006273.1 + 65226 0.66 0.996879
Target:  5'- uGAGggUGA-GGAGGGugaUGACguACAUCu -3'
miRNA:   3'- -CUCuuGCUaCCUCCU---GCUGguUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 67431 0.66 0.996879
Target:  5'- aGAGGccggcaagcucACGGuaacuucugUGGAGGACGugCAGCGu- -3'
miRNA:   3'- -CUCU-----------UGCU---------ACCUCCUGCugGUUGUgg -5'
29810 5' -51.5 NC_006273.1 + 202193 0.66 0.996879
Target:  5'- cGGAACGGaGGAGGcuuuCG-CC-ACACCu -3'
miRNA:   3'- cUCUUGCUaCCUCCu---GCuGGuUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 136097 0.66 0.996879
Target:  5'- cGAGGACGccGUGGGcGGCGAUC-GCGCUu -3'
miRNA:   3'- -CUCUUGC--UACCUcCUGCUGGuUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 164545 0.66 0.996879
Target:  5'- gGAGGGCGgcGGcGGuCGGCC--CGCCa -3'
miRNA:   3'- -CUCUUGCuaCCuCCuGCUGGuuGUGG- -5'
29810 5' -51.5 NC_006273.1 + 51578 0.66 0.996879
Target:  5'- gGAGGACGGaGGGGuGGCGG-CGGCAgCg -3'
miRNA:   3'- -CUCUUGCUaCCUC-CUGCUgGUUGUgG- -5'
29810 5' -51.5 NC_006273.1 + 34028 0.66 0.996829
Target:  5'- cGGGAAUGGUgggacgccaccgcGGAGGGCGACaaaGAggagugguCGCCg -3'
miRNA:   3'- -CUCUUGCUA-------------CCUCCUGCUGg--UU--------GUGG- -5'
29810 5' -51.5 NC_006273.1 + 41091 0.67 0.996347
Target:  5'- cGGGGACGGUGGugAGGACGGggaCAGgGgCa -3'
miRNA:   3'- -CUCUUGCUACC--UCCUGCUg--GUUgUgG- -5'
29810 5' -51.5 NC_006273.1 + 1153 0.67 0.996347
Target:  5'- cGGGGACGGUGGugAGGACGGggaCAGgGgCa -3'
miRNA:   3'- -CUCUUGCUACC--UCCUGCUg--GUUgUgG- -5'
29810 5' -51.5 NC_006273.1 + 149614 0.67 0.996347
Target:  5'- aGGGGCGAaugGGcAGGACGGCgaCGGCAgCg -3'
miRNA:   3'- cUCUUGCUa--CC-UCCUGCUG--GUUGUgG- -5'
29810 5' -51.5 NC_006273.1 + 88983 0.67 0.996347
Target:  5'- aGAGGACGAcgaUGaugaagacuucGAGGACGcuuaaccccgccGCCAcccGCACCa -3'
miRNA:   3'- -CUCUUGCU---AC-----------CUCCUGC------------UGGU---UGUGG- -5'
29810 5' -51.5 NC_006273.1 + 169895 0.67 0.996347
Target:  5'- uGAGGGgGA-GGAGGA-GGCgGugGCCa -3'
miRNA:   3'- -CUCUUgCUaCCUCCUgCUGgUugUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.