miRNA display CGI


Results 41 - 60 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29810 5' -51.5 NC_006273.1 + 87437 0.67 0.99629
Target:  5'- -cGGGCGAcGGGGGcucggagAUGACCGGCugUg -3'
miRNA:   3'- cuCUUGCUaCCUCC-------UGCUGGUUGugG- -5'
29810 5' -51.5 NC_006273.1 + 136389 0.67 0.995744
Target:  5'- cGAGAAgaGAUGGAaGcgaauaagcGCGACCGgcaGCACCa -3'
miRNA:   3'- -CUCUUg-CUACCUcC---------UGCUGGU---UGUGG- -5'
29810 5' -51.5 NC_006273.1 + 194242 0.67 0.995744
Target:  5'- aAGAcaGCGA-GGAGGAagacgaCGACUccucgGACACCg -3'
miRNA:   3'- cUCU--UGCUaCCUCCU------GCUGG-----UUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 21660 0.67 0.995744
Target:  5'- cGAGAccACGGcgcUGGuGGccgacgugcACGACCuGCGCCa -3'
miRNA:   3'- -CUCU--UGCU---ACCuCC---------UGCUGGuUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 1971 0.67 0.995744
Target:  5'- cGGGGccgGCGAcGG-GGACGACgucGCGCCa -3'
miRNA:   3'- -CUCU---UGCUaCCuCCUGCUGgu-UGUGG- -5'
29810 5' -51.5 NC_006273.1 + 204675 0.67 0.995133
Target:  5'- aGGAACaGGUGGAcggGGACcacaggaucauagccGCCGGCACCg -3'
miRNA:   3'- cUCUUG-CUACCU---CCUGc--------------UGGUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 195172 0.67 0.995061
Target:  5'- --cGGC-AUGGGGGGCG-CCAaaACGCCg -3'
miRNA:   3'- cucUUGcUACCUCCUGCuGGU--UGUGG- -5'
29810 5' -51.5 NC_006273.1 + 145578 0.67 0.995061
Target:  5'- cGGGggUGGUGGAcgGGACGugaGCgGGgGCCc -3'
miRNA:   3'- -CUCuuGCUACCU--CCUGC---UGgUUgUGG- -5'
29810 5' -51.5 NC_006273.1 + 82918 0.67 0.995061
Target:  5'- cGGAGCGGcUGGAGGcgcagcugcGCGGCaAGCACa -3'
miRNA:   3'- cUCUUGCU-ACCUCC---------UGCUGgUUGUGg -5'
29810 5' -51.5 NC_006273.1 + 147531 0.67 0.995061
Target:  5'- cGGGAGgCGAUGG-GGGCGcGCCGAUgACg -3'
miRNA:   3'- -CUCUU-GCUACCuCCUGC-UGGUUG-UGg -5'
29810 5' -51.5 NC_006273.1 + 71940 0.67 0.99461
Target:  5'- --uGACGAgUGGcGGACaugcgacugcuggggGGCCAACGCCg -3'
miRNA:   3'- cucUUGCU-ACCuCCUG---------------CUGGUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 99353 0.67 0.994292
Target:  5'- cGGAACGcgGcccgcGGAuCGGCCAGCGCUg -3'
miRNA:   3'- cUCUUGCuaCcu---CCU-GCUGGUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 73738 0.67 0.994292
Target:  5'- --cAugGGUGGcGGcGGCGGCCGAgGCCc -3'
miRNA:   3'- cucUugCUACC-UC-CUGCUGGUUgUGG- -5'
29810 5' -51.5 NC_006273.1 + 70683 0.67 0.994292
Target:  5'- --cGGCGGUGGAGGGCG-CgCGGCAa- -3'
miRNA:   3'- cucUUGCUACCUCCUGCuG-GUUGUgg -5'
29810 5' -51.5 NC_006273.1 + 153290 0.67 0.994292
Target:  5'- cAGAACGGuacagauucuuUGGAcGGACGgACUGGCACg -3'
miRNA:   3'- cUCUUGCU-----------ACCU-CCUGC-UGGUUGUGg -5'
29810 5' -51.5 NC_006273.1 + 17150 0.67 0.994292
Target:  5'- aGAGGaagACGAaGGAaacGACGGCC-GCGCCa -3'
miRNA:   3'- -CUCU---UGCUaCCUc--CUGCUGGuUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 81139 0.67 0.993428
Target:  5'- cGAGGgguuGCgGAUGGAgcuGGGCGGCC-GCACg -3'
miRNA:   3'- -CUCU----UG-CUACCU---CCUGCUGGuUGUGg -5'
29810 5' -51.5 NC_006273.1 + 37260 0.67 0.993428
Target:  5'- cGAcGACGA-GGAGGAagacGCCGugGCCg -3'
miRNA:   3'- -CUcUUGCUaCCUCCUgc--UGGUugUGG- -5'
29810 5' -51.5 NC_006273.1 + 57162 0.67 0.993428
Target:  5'- aGGAuaaacuUGAUGGccGGugGACCGgcguGCACCa -3'
miRNA:   3'- cUCUu-----GCUACCu-CCugCUGGU----UGUGG- -5'
29810 5' -51.5 NC_006273.1 + 105441 0.67 0.993428
Target:  5'- cGAGAACG-UGGuAGGACaGCgcGCGCCc -3'
miRNA:   3'- -CUCUUGCuACC-UCCUGcUGguUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.