miRNA display CGI


Results 61 - 80 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29810 5' -51.5 NC_006273.1 + 164630 0.68 0.992464
Target:  5'- cGGGAA-GGUGG-GGAaggccuCGuCCAACACCa -3'
miRNA:   3'- -CUCUUgCUACCuCCU------GCuGGUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 202429 0.68 0.992464
Target:  5'- ---uGCGAcgUGGAGGA-GACCAuccuCACCc -3'
miRNA:   3'- cucuUGCU--ACCUCCUgCUGGUu---GUGG- -5'
29810 5' -51.5 NC_006273.1 + 113724 0.68 0.992464
Target:  5'- cGAGGacaGCGccGGAGGugGCGACggcggCGGCGCCg -3'
miRNA:   3'- -CUCU---UGCuaCCUCC--UGCUG-----GUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 185412 0.68 0.992464
Target:  5'- ---cGCGGccGAcguGGugGACCAGCACCg -3'
miRNA:   3'- cucuUGCUacCU---CCugCUGGUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 169851 0.68 0.99139
Target:  5'- uAGGACGGUGGuaccgcGGACGAagaaGAgGCCg -3'
miRNA:   3'- cUCUUGCUACCu-----CCUGCUgg--UUgUGG- -5'
29810 5' -51.5 NC_006273.1 + 21523 0.68 0.99139
Target:  5'- -cGAGCGGggacgGGAcGACGACC--CACCg -3'
miRNA:   3'- cuCUUGCUa----CCUcCUGCUGGuuGUGG- -5'
29810 5' -51.5 NC_006273.1 + 126995 0.68 0.99139
Target:  5'- gGAGAccGCGGUGGcGGcCGGCaucaggagaAACGCCg -3'
miRNA:   3'- -CUCU--UGCUACCuCCuGCUGg--------UUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 31537 0.68 0.990689
Target:  5'- uGAGGACGAcgacuacuauuacuaUagGGAGGACGAaccgcgaCAACACg -3'
miRNA:   3'- -CUCUUGCU---------------A--CCUCCUGCUg------GUUGUGg -5'
29810 5' -51.5 NC_006273.1 + 139630 0.68 0.990198
Target:  5'- cGAGGACGAcGGAGGAUccACCugaaaACCa -3'
miRNA:   3'- -CUCUUGCUaCCUCCUGc-UGGuug--UGG- -5'
29810 5' -51.5 NC_006273.1 + 179323 0.68 0.990198
Target:  5'- aGGAACGcacgcUGGAGGACGcGCUGGCugUc -3'
miRNA:   3'- cUCUUGCu----ACCUCCUGC-UGGUUGugG- -5'
29810 5' -51.5 NC_006273.1 + 140659 0.68 0.990198
Target:  5'- gGGGAGCugGGUGGGGGAUccCCGGuCGCCc -3'
miRNA:   3'- -CUCUUG--CUACCUCCUGcuGGUU-GUGG- -5'
29810 5' -51.5 NC_006273.1 + 39349 0.68 0.990198
Target:  5'- cGGcACGAUGGAcGACGACgaggCGGCGCUa -3'
miRNA:   3'- cUCuUGCUACCUcCUGCUG----GUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 29297 0.68 0.989424
Target:  5'- --aGACGcUGGAGGGCuacgcggaucgaguGCCGACGCCg -3'
miRNA:   3'- cucUUGCuACCUCCUGc-------------UGGUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 145661 0.68 0.987431
Target:  5'- gGGGAAUGAUGGGGcGCGGCgGuCGCa -3'
miRNA:   3'- -CUCUUGCUACCUCcUGCUGgUuGUGg -5'
29810 5' -51.5 NC_006273.1 + 160867 0.68 0.987431
Target:  5'- cGGAAUccUGGAGGgaaaagACGAgCCGGCGCCg -3'
miRNA:   3'- cUCUUGcuACCUCC------UGCU-GGUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 148072 0.69 0.985838
Target:  5'- gGAGAuuu-UGGAGGcCGcACCGGCACUg -3'
miRNA:   3'- -CUCUugcuACCUCCuGC-UGGUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 140211 0.69 0.985838
Target:  5'- gGGGAGgGGagUGGGGGACcacgcccagGGCCAGCaaGCCg -3'
miRNA:   3'- -CUCUUgCU--ACCUCCUG---------CUGGUUG--UGG- -5'
29810 5' -51.5 NC_006273.1 + 41192 0.69 0.984096
Target:  5'- cGGGGACGGggacGGGGGccuuucGCGGCgGACACg -3'
miRNA:   3'- -CUCUUGCUa---CCUCC------UGCUGgUUGUGg -5'
29810 5' -51.5 NC_006273.1 + 218207 0.69 0.984096
Target:  5'- -cGGcCGAcGGcGGACGACCGGCAUg -3'
miRNA:   3'- cuCUuGCUaCCuCCUGCUGGUUGUGg -5'
29810 5' -51.5 NC_006273.1 + 200645 0.69 0.984096
Target:  5'- cGAGuccGCGAgucucaGGAacaGGACGGCCAggaucgcgaGCACCa -3'
miRNA:   3'- -CUCu--UGCUa-----CCU---CCUGCUGGU---------UGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.