miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29810 5' -51.5 NC_006273.1 + 863 0.7 0.970055
Target:  5'- -uGGACGucGGAGGuguccgGCGGCCAugGCCc -3'
miRNA:   3'- cuCUUGCuaCCUCC------UGCUGGUugUGG- -5'
29810 5' -51.5 NC_006273.1 + 1153 0.67 0.996347
Target:  5'- cGGGGACGGUGGugAGGACGGggaCAGgGgCa -3'
miRNA:   3'- -CUCUUGCUACC--UCCUGCUg--GUUgUgG- -5'
29810 5' -51.5 NC_006273.1 + 1254 0.69 0.984096
Target:  5'- cGGGGACGGggacGGGGGccuuucGCGGCgGACACg -3'
miRNA:   3'- -CUCUUGCUa---CCUCC------UGCUGgUUGUGg -5'
29810 5' -51.5 NC_006273.1 + 1733 0.71 0.952907
Target:  5'- cGGGAgcuGCGccGGcGGugGGCCGGCACg -3'
miRNA:   3'- -CUCU---UGCuaCCuCCugCUGGUUGUGg -5'
29810 5' -51.5 NC_006273.1 + 1971 0.67 0.995744
Target:  5'- cGGGGccgGCGAcGG-GGACGACgucGCGCCa -3'
miRNA:   3'- -CUCU---UGCUaCCuCCUGCUGgu-UGUGG- -5'
29810 5' -51.5 NC_006273.1 + 8378 0.66 0.998105
Target:  5'- aGAGAcAUGGuuUGGGGGG-GACCGGCGgCg -3'
miRNA:   3'- -CUCU-UGCU--ACCUCCUgCUGGUUGUgG- -5'
29810 5' -51.5 NC_006273.1 + 17150 0.67 0.994292
Target:  5'- aGAGGaagACGAaGGAaacGACGGCC-GCGCCa -3'
miRNA:   3'- -CUCU---UGCUaCCUc--CUGCUGGuUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 19761 0.66 0.99841
Target:  5'- gGAGGACGAguggcuacgGGAGauacaaggagcGACGuACCAGCuguCCa -3'
miRNA:   3'- -CUCUUGCUa--------CCUC-----------CUGC-UGGUUGu--GG- -5'
29810 5' -51.5 NC_006273.1 + 20900 0.77 0.706986
Target:  5'- gGAGAACGA-GGaAGGugGACCGugugaauCGCCg -3'
miRNA:   3'- -CUCUUGCUaCC-UCCugCUGGUu------GUGG- -5'
29810 5' -51.5 NC_006273.1 + 21523 0.68 0.99139
Target:  5'- -cGAGCGGggacgGGAcGACGACC--CACCg -3'
miRNA:   3'- cuCUUGCUa----CCUcCUGCUGGuuGUGG- -5'
29810 5' -51.5 NC_006273.1 + 21660 0.67 0.995744
Target:  5'- cGAGAccACGGcgcUGGuGGccgacgugcACGACCuGCGCCa -3'
miRNA:   3'- -CUCU--UGCU---ACCuCC---------UGCUGGuUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 29297 0.68 0.989424
Target:  5'- --aGACGcUGGAGGGCuacgcggaucgaguGCCGACGCCg -3'
miRNA:   3'- cucUUGCuACCUCCUGc-------------UGGUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 29431 0.69 0.977889
Target:  5'- cGAcGACGAUGGGGauaaggucGACgGGCCAGCGCa -3'
miRNA:   3'- -CUcUUGCUACCUC--------CUG-CUGGUUGUGg -5'
29810 5' -51.5 NC_006273.1 + 31329 0.66 0.99841
Target:  5'- ---cACGAaaaGGAgugacGGACGGCCAguACGCCa -3'
miRNA:   3'- cucuUGCUa--CCU-----CCUGCUGGU--UGUGG- -5'
29810 5' -51.5 NC_006273.1 + 31537 0.68 0.990689
Target:  5'- uGAGGACGAcgacuacuauuacuaUagGGAGGACGAaccgcgaCAACACg -3'
miRNA:   3'- -CUCUUGCU---------------A--CCUCCUGCUg------GUUGUGg -5'
29810 5' -51.5 NC_006273.1 + 34028 0.66 0.996829
Target:  5'- cGGGAAUGGUgggacgccaccgcGGAGGGCGACaaaGAggagugguCGCCg -3'
miRNA:   3'- -CUCUUGCUA-------------CCUCCUGCUGg--UU--------GUGG- -5'
29810 5' -51.5 NC_006273.1 + 34933 0.69 0.984096
Target:  5'- uGGGuuAGCGGUGGAGGugGCGGCUGAU-CCa -3'
miRNA:   3'- -CUC--UUGCUACCUCC--UGCUGGUUGuGG- -5'
29810 5' -51.5 NC_006273.1 + 36542 0.69 0.980129
Target:  5'- cGGAGCGGaGGAGG-UGACCuGGCugCu -3'
miRNA:   3'- cUCUUGCUaCCUCCuGCUGG-UUGugG- -5'
29810 5' -51.5 NC_006273.1 + 37260 0.67 0.993428
Target:  5'- cGAcGACGA-GGAGGAagacGCCGugGCCg -3'
miRNA:   3'- -CUcUUGCUaCCUCCUgc--UGGUugUGG- -5'
29810 5' -51.5 NC_006273.1 + 37339 0.69 0.977889
Target:  5'- --uGGCGGcagcGGAGGugGGCCGGgGCCc -3'
miRNA:   3'- cucUUGCUa---CCUCCugCUGGUUgUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.