miRNA display CGI


Results 21 - 40 of 135 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29810 5' -51.5 NC_006273.1 + 37743 0.66 0.998673
Target:  5'- -uGAGCGGUGGGGGcauCGuugCAGCGuCCg -3'
miRNA:   3'- cuCUUGCUACCUCCu--GCug-GUUGU-GG- -5'
29810 5' -51.5 NC_006273.1 + 38516 0.81 0.496945
Target:  5'- gGAGGACGAaGGAggggagacgaGGACGACgGGCACCa -3'
miRNA:   3'- -CUCUUGCUaCCU----------CCUGCUGgUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 39349 0.68 0.990198
Target:  5'- cGGcACGAUGGAcGACGACgaggCGGCGCUa -3'
miRNA:   3'- cUCuUGCUACCUcCUGCUG----GUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 41091 0.67 0.996347
Target:  5'- cGGGGACGGUGGugAGGACGGggaCAGgGgCa -3'
miRNA:   3'- -CUCUUGCUACC--UCCUGCUg--GUUgUgG- -5'
29810 5' -51.5 NC_006273.1 + 41192 0.69 0.984096
Target:  5'- cGGGGACGGggacGGGGGccuuucGCGGCgGACACg -3'
miRNA:   3'- -CUCUUGCUa---CCUCC------UGCUGgUUGUGg -5'
29810 5' -51.5 NC_006273.1 + 41992 0.71 0.948816
Target:  5'- uGGGGCGGUgaagaaggGGAGGACGACguucuCGCCa -3'
miRNA:   3'- cUCUUGCUA--------CCUCCUGCUGguu--GUGG- -5'
29810 5' -51.5 NC_006273.1 + 44268 0.66 0.996879
Target:  5'- --cGAUGAgagGGAGGAUGGCCGu--CCg -3'
miRNA:   3'- cucUUGCUa--CCUCCUGCUGGUuguGG- -5'
29810 5' -51.5 NC_006273.1 + 44706 0.74 0.873755
Target:  5'- uGAGAcgacgccGCuGGUGGAGGACG-CCGAacCGCCg -3'
miRNA:   3'- -CUCU-------UG-CUACCUCCUGCuGGUU--GUGG- -5'
29810 5' -51.5 NC_006273.1 + 45931 0.66 0.998673
Target:  5'- cGAGGGaGA-GGAGGACGACgAcgaGCuCCg -3'
miRNA:   3'- -CUCUUgCUaCCUCCUGCUGgU---UGuGG- -5'
29810 5' -51.5 NC_006273.1 + 49673 0.66 0.997345
Target:  5'- cGAcAGCG-UGGAcgacuGGGCGACCAccucgguuuuuuACGCCa -3'
miRNA:   3'- -CUcUUGCuACCU-----CCUGCUGGU------------UGUGG- -5'
29810 5' -51.5 NC_006273.1 + 51119 0.7 0.970055
Target:  5'- aGGGGACGAcgaggcgGuGAGGGCuAUCGACGCCu -3'
miRNA:   3'- -CUCUUGCUa------C-CUCCUGcUGGUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 51578 0.66 0.996879
Target:  5'- gGAGGACGGaGGGGuGGCGG-CGGCAgCg -3'
miRNA:   3'- -CUCUUGCUaCCUC-CUGCUgGUUGUgG- -5'
29810 5' -51.5 NC_006273.1 + 56133 0.7 0.972859
Target:  5'- --aAACGGgccgcGGAGGcgGCGACCGACGCg -3'
miRNA:   3'- cucUUGCUa----CCUCC--UGCUGGUUGUGg -5'
29810 5' -51.5 NC_006273.1 + 57023 0.66 0.998673
Target:  5'- uGGGACGAggaGGAGGaggcguccGCGGCCcgcgAGCGCa -3'
miRNA:   3'- cUCUUGCUa--CCUCC--------UGCUGG----UUGUGg -5'
29810 5' -51.5 NC_006273.1 + 57162 0.67 0.993428
Target:  5'- aGGAuaaacuUGAUGGccGGugGACCGgcguGCACCa -3'
miRNA:   3'- cUCUu-----GCUACCu-CCugCUGGU----UGUGG- -5'
29810 5' -51.5 NC_006273.1 + 61714 0.71 0.956771
Target:  5'- gGAGAucggcGCGGUGGAugcccaGGACGugACCGcgaGCGCCg -3'
miRNA:   3'- -CUCU-----UGCUACCU------CCUGC--UGGU---UGUGG- -5'
29810 5' -51.5 NC_006273.1 + 65226 0.66 0.996879
Target:  5'- uGAGggUGA-GGAGGGugaUGACguACAUCu -3'
miRNA:   3'- -CUCuuGCUaCCUCCU---GCUGguUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 67431 0.66 0.996879
Target:  5'- aGAGGccggcaagcucACGGuaacuucugUGGAGGACGugCAGCGu- -3'
miRNA:   3'- -CUCU-----------UGCU---------ACCUCCUGCugGUUGUgg -5'
29810 5' -51.5 NC_006273.1 + 68030 0.7 0.972859
Target:  5'- gGAGGACugccggcaGGUGuGGGcuCGGCCAGCGCCg -3'
miRNA:   3'- -CUCUUG--------CUACcUCCu-GCUGGUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 68422 0.69 0.977889
Target:  5'- -uGAGCGgcGGAcuGGACGugaccacccCCGACGCCa -3'
miRNA:   3'- cuCUUGCuaCCU--CCUGCu--------GGUUGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.