miRNA display CGI


Results 41 - 60 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29810 5' -51.5 NC_006273.1 + 70683 0.67 0.994292
Target:  5'- --cGGCGGUGGAGGGCG-CgCGGCAa- -3'
miRNA:   3'- cucUUGCUACCUCCUGCuG-GUUGUgg -5'
29810 5' -51.5 NC_006273.1 + 71642 0.78 0.685988
Target:  5'- gGAGGACGA-GGAGGACGucgcugcuaaaccGCCGcGCGCCu -3'
miRNA:   3'- -CUCUUGCUaCCUCCUGC-------------UGGU-UGUGG- -5'
29810 5' -51.5 NC_006273.1 + 71940 0.67 0.99461
Target:  5'- --uGACGAgUGGcGGACaugcgacugcuggggGGCCAACGCCg -3'
miRNA:   3'- cucUUGCU-ACCuCCUG---------------CUGGUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 73299 0.66 0.99841
Target:  5'- cGGAGCGugucGGAGacGACGauugGCCAugACCg -3'
miRNA:   3'- cUCUUGCua--CCUC--CUGC----UGGUugUGG- -5'
29810 5' -51.5 NC_006273.1 + 73738 0.67 0.994292
Target:  5'- --cAugGGUGGcGGcGGCGGCCGAgGCCc -3'
miRNA:   3'- cucUugCUACC-UC-CUGCUGGUUgUGG- -5'
29810 5' -51.5 NC_006273.1 + 81139 0.67 0.993428
Target:  5'- cGAGGgguuGCgGAUGGAgcuGGGCGGCC-GCACg -3'
miRNA:   3'- -CUCU----UG-CUACCU---CCUGCUGGuUGUGg -5'
29810 5' -51.5 NC_006273.1 + 82918 0.67 0.995061
Target:  5'- cGGAGCGGcUGGAGGcgcagcugcGCGGCaAGCACa -3'
miRNA:   3'- cUCUUGCU-ACCUCC---------UGCUGgUUGUGg -5'
29810 5' -51.5 NC_006273.1 + 83153 0.7 0.972859
Target:  5'- gGAG-AUGAUGGAGcagcACGACCGgggcagcgACGCCa -3'
miRNA:   3'- -CUCuUGCUACCUCc---UGCUGGU--------UGUGG- -5'
29810 5' -51.5 NC_006273.1 + 83692 0.74 0.874476
Target:  5'- --uGGCGGUGGAGGACaaccgccugguGGCCAACAgCu -3'
miRNA:   3'- cucUUGCUACCUCCUG-----------CUGGUUGUgG- -5'
29810 5' -51.5 NC_006273.1 + 85330 0.77 0.716893
Target:  5'- uGGaAGCGGUGGAGGACGACaauaacucucGCGCCc -3'
miRNA:   3'- cUC-UUGCUACCUCCUGCUGgu--------UGUGG- -5'
29810 5' -51.5 NC_006273.1 + 86707 0.66 0.997345
Target:  5'- cGAGcccACGAUGucGGGCaGGCC-GCACCa -3'
miRNA:   3'- -CUCu--UGCUACcuCCUG-CUGGuUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 87437 0.67 0.99629
Target:  5'- -cGGGCGAcGGGGGcucggagAUGACCGGCugUg -3'
miRNA:   3'- cuCUUGCUaCCUCC-------UGCUGGUUGugG- -5'
29810 5' -51.5 NC_006273.1 + 87690 0.7 0.972859
Target:  5'- -cGggUGGUGGcGGugGugCAGCGgCg -3'
miRNA:   3'- cuCuuGCUACCuCCugCugGUUGUgG- -5'
29810 5' -51.5 NC_006273.1 + 88983 0.67 0.996347
Target:  5'- aGAGGACGAcgaUGaugaagacuucGAGGACGcuuaaccccgccGCCAcccGCACCa -3'
miRNA:   3'- -CUCUUGCU---AC-----------CUCCUGC------------UGGU---UGUGG- -5'
29810 5' -51.5 NC_006273.1 + 94851 0.81 0.525951
Target:  5'- -uGGACGGUGGugGGGACGGgCGACGCCc -3'
miRNA:   3'- cuCUUGCUACC--UCCUGCUgGUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 95301 0.66 0.997751
Target:  5'- cGGGGuCGAcGGuGGGCcGCCAugACACCu -3'
miRNA:   3'- -CUCUuGCUaCCuCCUGcUGGU--UGUGG- -5'
29810 5' -51.5 NC_006273.1 + 96230 0.71 0.956771
Target:  5'- --aAGCGAUGGAGGAcCGcACCcaaaguGCGCCc -3'
miRNA:   3'- cucUUGCUACCUCCU-GC-UGGu-----UGUGG- -5'
29810 5' -51.5 NC_006273.1 + 97407 0.69 0.982195
Target:  5'- aGAGAGCGGcccuacaucGGGGGGCGcUCGAgACCg -3'
miRNA:   3'- -CUCUUGCUa--------CCUCCUGCuGGUUgUGG- -5'
29810 5' -51.5 NC_006273.1 + 99353 0.67 0.994292
Target:  5'- cGGAACGcgGcccgcGGAuCGGCCAGCGCUg -3'
miRNA:   3'- cUCUUGCuaCcu---CCU-GCUGGUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 101698 0.71 0.944497
Target:  5'- uGAGAccGCuGccGGGGGGCGggucACCGGCGCCg -3'
miRNA:   3'- -CUCU--UG-CuaCCUCCUGC----UGGUUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.