miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29810 5' -51.5 NC_006273.1 + 229837 0.74 0.859657
Target:  5'- cGGGAACGgcGaGAGGACGAUCuucGCACg -3'
miRNA:   3'- -CUCUUGCuaC-CUCCUGCUGGu--UGUGg -5'
29810 5' -51.5 NC_006273.1 + 218207 0.69 0.984096
Target:  5'- -cGGcCGAcGGcGGACGACCGGCAUg -3'
miRNA:   3'- cuCUuGCUaCCuCCUGCUGGUUGUGg -5'
29810 5' -51.5 NC_006273.1 + 215973 0.66 0.998105
Target:  5'- cAGAuCGGuuUGGGGGAUGAgcaCGAUGCCg -3'
miRNA:   3'- cUCUuGCU--ACCUCCUGCUg--GUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 214384 0.66 0.998673
Target:  5'- cAGAGCGAgcguGAGGAaCGAaagCAGCAUCa -3'
miRNA:   3'- cUCUUGCUac--CUCCU-GCUg--GUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 212935 0.79 0.605895
Target:  5'- cGGGuACGAUGGAGGAUagGGCUGGCACUa -3'
miRNA:   3'- -CUCuUGCUACCUCCUG--CUGGUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 212087 0.66 0.99841
Target:  5'- cAGAGUGAUGGcuGA-GACCAACACg -3'
miRNA:   3'- cUCUUGCUACCucCUgCUGGUUGUGg -5'
29810 5' -51.5 NC_006273.1 + 211176 0.71 0.960413
Target:  5'- -uGAuUGGUGGA-GACGGCCGGCGCg -3'
miRNA:   3'- cuCUuGCUACCUcCUGCUGGUUGUGg -5'
29810 5' -51.5 NC_006273.1 + 207461 0.76 0.792821
Target:  5'- gGGGGACGAUGGGuGGugGcuacgaGCCAcCGCCa -3'
miRNA:   3'- -CUCUUGCUACCU-CCugC------UGGUuGUGG- -5'
29810 5' -51.5 NC_006273.1 + 204675 0.67 0.995133
Target:  5'- aGGAACaGGUGGAcggGGACcacaggaucauagccGCCGGCACCg -3'
miRNA:   3'- cUCUUG-CUACCU---CCUGc--------------UGGUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 202429 0.68 0.992464
Target:  5'- ---uGCGAcgUGGAGGA-GACCAuccuCACCc -3'
miRNA:   3'- cucuUGCU--ACCUCCUgCUGGUu---GUGG- -5'
29810 5' -51.5 NC_006273.1 + 202193 0.66 0.996879
Target:  5'- cGGAACGGaGGAGGcuuuCG-CC-ACACCu -3'
miRNA:   3'- cUCUUGCUaCCUCCu---GCuGGuUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 200645 0.69 0.984096
Target:  5'- cGAGuccGCGAgucucaGGAacaGGACGGCCAggaucgcgaGCACCa -3'
miRNA:   3'- -CUCu--UGCUa-----CCU---CCUGCUGGU---------UGUGG- -5'
29810 5' -51.5 NC_006273.1 + 198924 0.66 0.998673
Target:  5'- uGAGGGCGcc-GAGGACaaGACCuucuuuCACCg -3'
miRNA:   3'- -CUCUUGCuacCUCCUG--CUGGuu----GUGG- -5'
29810 5' -51.5 NC_006273.1 + 198005 0.71 0.943156
Target:  5'- -uGAGCGuGUGGAGGACGggguggagcgggucGCCGAgACUa -3'
miRNA:   3'- cuCUUGC-UACCUCCUGC--------------UGGUUgUGG- -5'
29810 5' -51.5 NC_006273.1 + 196625 0.71 0.952907
Target:  5'- cGGGAgcuGCGccGGcGGugGGCCGGCACg -3'
miRNA:   3'- -CUCU---UGCuaCCuCCugCUGGUUGUGg -5'
29810 5' -51.5 NC_006273.1 + 195755 0.7 0.970055
Target:  5'- -uGGACGucGGAGGuguccgGCGGCCAugGCCc -3'
miRNA:   3'- cuCUUGCuaCCUCC------UGCUGGUugUGG- -5'
29810 5' -51.5 NC_006273.1 + 195172 0.67 0.995061
Target:  5'- --cGGC-AUGGGGGGCG-CCAaaACGCCg -3'
miRNA:   3'- cucUUGcUACCUCCUGCuGGU--UGUGG- -5'
29810 5' -51.5 NC_006273.1 + 194242 0.67 0.995744
Target:  5'- aAGAcaGCGA-GGAGGAagacgaCGACUccucgGACACCg -3'
miRNA:   3'- cUCU--UGCUaCCUCCU------GCUGG-----UUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 190062 0.7 0.96705
Target:  5'- --cGACGGcgGGGGGACGAacaccgUCGGCGCCg -3'
miRNA:   3'- cucUUGCUa-CCUCCUGCU------GGUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 185412 0.68 0.992464
Target:  5'- ---cGCGGccGAcguGGugGACCAGCACCg -3'
miRNA:   3'- cucuUGCUacCU---CCugCUGGUUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.