miRNA display CGI


Results 21 - 40 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29810 5' -51.5 NC_006273.1 + 185029 0.66 0.998072
Target:  5'- aGGGGAUGGUaacuugcucucccucGGCGACCAACACCg -3'
miRNA:   3'- -CUCUUGCUAccuc-----------CUGCUGGUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 179323 0.68 0.990198
Target:  5'- aGGAACGcacgcUGGAGGACGcGCUGGCugUc -3'
miRNA:   3'- cUCUUGCu----ACCUCCUGC-UGGUUGugG- -5'
29810 5' -51.5 NC_006273.1 + 169895 0.67 0.996347
Target:  5'- uGAGGGgGA-GGAGGA-GGCgGugGCCa -3'
miRNA:   3'- -CUCUUgCUaCCUCCUgCUGgUugUGG- -5'
29810 5' -51.5 NC_006273.1 + 169851 0.68 0.99139
Target:  5'- uAGGACGGUGGuaccgcGGACGAagaaGAgGCCg -3'
miRNA:   3'- cUCUUGCUACCu-----CCUGCUgg--UUgUGG- -5'
29810 5' -51.5 NC_006273.1 + 164679 0.74 0.867171
Target:  5'- -cGAACG-UGGAGGGCGGuCgCAGCACg -3'
miRNA:   3'- cuCUUGCuACCUCCUGCU-G-GUUGUGg -5'
29810 5' -51.5 NC_006273.1 + 164630 0.68 0.992464
Target:  5'- cGGGAA-GGUGG-GGAaggccuCGuCCAACACCa -3'
miRNA:   3'- -CUCUUgCUACCuCCU------GCuGGUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 164545 0.66 0.996879
Target:  5'- gGAGGGCGgcGGcGGuCGGCC--CGCCa -3'
miRNA:   3'- -CUCUUGCuaCCuCCuGCUGGuuGUGG- -5'
29810 5' -51.5 NC_006273.1 + 163910 0.66 0.997751
Target:  5'- --cAGCGA-GGAGGcuGCGAUCGcCGCCg -3'
miRNA:   3'- cucUUGCUaCCUCC--UGCUGGUuGUGG- -5'
29810 5' -51.5 NC_006273.1 + 163802 0.73 0.881567
Target:  5'- cGGGAcccACGGUGGccaacaagcGGGACGAaaAACACCg -3'
miRNA:   3'- -CUCU---UGCUACC---------UCCUGCUggUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 163118 0.7 0.975468
Target:  5'- gGAGGAUGA-GGAGGgcuccggcugagGCGGCggaGGCACCa -3'
miRNA:   3'- -CUCUUGCUaCCUCC------------UGCUGg--UUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 160867 0.68 0.987431
Target:  5'- cGGAAUccUGGAGGgaaaagACGAgCCGGCGCCg -3'
miRNA:   3'- cUCUUGcuACCUCC------UGCU-GGUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 159303 0.66 0.998105
Target:  5'- cAGAGCGAgaagGGA-GACGACaGACAUa -3'
miRNA:   3'- cUCUUGCUa---CCUcCUGCUGgUUGUGg -5'
29810 5' -51.5 NC_006273.1 + 156186 0.69 0.980129
Target:  5'- aGGAACGcgGGAGGGgGAUucggaggagagCAGCACg -3'
miRNA:   3'- cUCUUGCuaCCUCCUgCUG-----------GUUGUGg -5'
29810 5' -51.5 NC_006273.1 + 153290 0.67 0.994292
Target:  5'- cAGAACGGuacagauucuuUGGAcGGACGgACUGGCACg -3'
miRNA:   3'- cUCUUGCU-----------ACCU-CCUGC-UGGUUGUGg -5'
29810 5' -51.5 NC_006273.1 + 149761 0.66 0.997751
Target:  5'- cAGAAgGucucGGAGGugGGCUAugGCa -3'
miRNA:   3'- cUCUUgCua--CCUCCugCUGGUugUGg -5'
29810 5' -51.5 NC_006273.1 + 149614 0.67 0.996347
Target:  5'- aGGGGCGAaugGGcAGGACGGCgaCGGCAgCg -3'
miRNA:   3'- cUCUUGCUa--CC-UCCUGCUG--GUUGUgG- -5'
29810 5' -51.5 NC_006273.1 + 148072 0.69 0.985838
Target:  5'- gGAGAuuu-UGGAGGcCGcACCGGCACUg -3'
miRNA:   3'- -CUCUugcuACCUCCuGC-UGGUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 147531 0.67 0.995061
Target:  5'- cGGGAGgCGAUGG-GGGCGcGCCGAUgACg -3'
miRNA:   3'- -CUCUU-GCUACCuCCUGC-UGGUUG-UGg -5'
29810 5' -51.5 NC_006273.1 + 147322 0.66 0.99841
Target:  5'- gGAGAacuuGCGAcgcgUGcuGGACG-CCGACGCCc -3'
miRNA:   3'- -CUCU----UGCU----ACcuCCUGCuGGUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 145688 0.7 0.970055
Target:  5'- -cGGACGAaggGGAGGACGAUgCGACGg- -3'
miRNA:   3'- cuCUUGCUa--CCUCCUGCUG-GUUGUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.