miRNA display CGI


Results 1 - 20 of 135 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29810 5' -51.5 NC_006273.1 + 145688 0.7 0.970055
Target:  5'- -cGGACGAaggGGAGGACGAUgCGACGg- -3'
miRNA:   3'- cuCUUGCUa--CCUCCUGCUG-GUUGUgg -5'
29810 5' -51.5 NC_006273.1 + 196625 0.71 0.952907
Target:  5'- cGGGAgcuGCGccGGcGGugGGCCGGCACg -3'
miRNA:   3'- -CUCU---UGCuaCCuCCugCUGGUUGUGg -5'
29810 5' -51.5 NC_006273.1 + 96230 0.71 0.956771
Target:  5'- --aAGCGAUGGAGGAcCGcACCcaaaguGCGCCc -3'
miRNA:   3'- cucUUGCUACCUCCU-GC-UGGu-----UGUGG- -5'
29810 5' -51.5 NC_006273.1 + 61714 0.71 0.956771
Target:  5'- gGAGAucggcGCGGUGGAugcccaGGACGugACCGcgaGCGCCg -3'
miRNA:   3'- -CUCU-----UGCUACCU------CCUGC--UGGU---UGUGG- -5'
29810 5' -51.5 NC_006273.1 + 144752 0.71 0.960413
Target:  5'- cAGAACGugcugcGGAGGcacgacgcgGCGGCCGugGCCu -3'
miRNA:   3'- cUCUUGCua----CCUCC---------UGCUGGUugUGG- -5'
29810 5' -51.5 NC_006273.1 + 211176 0.71 0.960413
Target:  5'- -uGAuUGGUGGA-GACGGCCGGCGCg -3'
miRNA:   3'- cuCUuGCUACCUcCUGCUGGUUGUGg -5'
29810 5' -51.5 NC_006273.1 + 115549 0.7 0.96705
Target:  5'- aGAGGAgGAUGGGGGG-GACCGggguggugguGCugCu -3'
miRNA:   3'- -CUCUUgCUACCUCCUgCUGGU----------UGugG- -5'
29810 5' -51.5 NC_006273.1 + 190062 0.7 0.96705
Target:  5'- --cGACGGcgGGGGGACGAacaccgUCGGCGCCg -3'
miRNA:   3'- cucUUGCUa-CCUCCUGCU------GGUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 132732 0.7 0.970055
Target:  5'- uGAGAGCGccGGGGaGACGA-CGACAgCa -3'
miRNA:   3'- -CUCUUGCuaCCUC-CUGCUgGUUGUgG- -5'
29810 5' -51.5 NC_006273.1 + 101698 0.71 0.944497
Target:  5'- uGAGAccGCuGccGGGGGGCGggucACCGGCGCCg -3'
miRNA:   3'- -CUCU--UG-CuaCCUCCUGC----UGGUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 122614 0.72 0.939946
Target:  5'- cAGcGCGAUGGAa-GCGcCCAGCACCg -3'
miRNA:   3'- cUCuUGCUACCUccUGCuGGUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 105344 0.72 0.939946
Target:  5'- aGAGGGCGAcgaGGAGGAugaagUGACCGugauguCGCCg -3'
miRNA:   3'- -CUCUUGCUa--CCUCCU-----GCUGGUu-----GUGG- -5'
29810 5' -51.5 NC_006273.1 + 94851 0.81 0.525951
Target:  5'- -uGGACGGUGGugGGGACGGgCGACGCCc -3'
miRNA:   3'- cuCUUGCUACC--UCCUGCUgGUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 212935 0.79 0.605895
Target:  5'- cGGGuACGAUGGAGGAUagGGCUGGCACUa -3'
miRNA:   3'- -CUCuUGCUACCUCCUG--CUGGUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 71642 0.78 0.685988
Target:  5'- gGAGGACGA-GGAGGACGucgcugcuaaaccGCCGcGCGCCu -3'
miRNA:   3'- -CUCUUGCUaCCUCCUGC-------------UGGU-UGUGG- -5'
29810 5' -51.5 NC_006273.1 + 20900 0.77 0.706986
Target:  5'- gGAGAACGA-GGaAGGugGACCGugugaauCGCCg -3'
miRNA:   3'- -CUCUUGCUaCC-UCCugCUGGUu------GUGG- -5'
29810 5' -51.5 NC_006273.1 + 207461 0.76 0.792821
Target:  5'- gGGGGACGAUGGGuGGugGcuacgaGCCAcCGCCa -3'
miRNA:   3'- -CUCUUGCUACCU-CCugC------UGGUuGUGG- -5'
29810 5' -51.5 NC_006273.1 + 229837 0.74 0.859657
Target:  5'- cGGGAACGgcGaGAGGACGAUCuucGCACg -3'
miRNA:   3'- -CUCUUGCuaC-CUCCUGCUGGu--UGUGg -5'
29810 5' -51.5 NC_006273.1 + 144206 0.72 0.924885
Target:  5'- -cGAGCGGUGc--GACGACCGGCACg -3'
miRNA:   3'- cuCUUGCUACcucCUGCUGGUUGUGg -5'
29810 5' -51.5 NC_006273.1 + 132994 0.72 0.935161
Target:  5'- -----aGAUGGAGGAgCGuCUAGCGCCg -3'
miRNA:   3'- cucuugCUACCUCCU-GCuGGUUGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.