Results 21 - 40 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29810 | 5' | -51.5 | NC_006273.1 | + | 145688 | 0.7 | 0.970055 |
Target: 5'- -cGGACGAaggGGAGGACGAUgCGACGg- -3' miRNA: 3'- cuCUUGCUa--CCUCCUGCUG-GUUGUgg -5' |
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29810 | 5' | -51.5 | NC_006273.1 | + | 132732 | 0.7 | 0.970055 |
Target: 5'- uGAGAGCGccGGGGaGACGA-CGACAgCa -3' miRNA: 3'- -CUCUUGCuaCCUC-CUGCUgGUUGUgG- -5' |
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29810 | 5' | -51.5 | NC_006273.1 | + | 132994 | 0.72 | 0.935161 |
Target: 5'- -----aGAUGGAGGAgCGuCUAGCGCCg -3' miRNA: 3'- cucuugCUACCUCCU-GCuGGUUGUGG- -5' |
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29810 | 5' | -51.5 | NC_006273.1 | + | 144206 | 0.72 | 0.924885 |
Target: 5'- -cGAGCGGUGc--GACGACCGGCACg -3' miRNA: 3'- cuCUUGCUACcucCUGCUGGUUGUGg -5' |
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29810 | 5' | -51.5 | NC_006273.1 | + | 229837 | 0.74 | 0.859657 |
Target: 5'- cGGGAACGgcGaGAGGACGAUCuucGCACg -3' miRNA: 3'- -CUCUUGCuaC-CUCCUGCUGGu--UGUGg -5' |
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29810 | 5' | -51.5 | NC_006273.1 | + | 207461 | 0.76 | 0.792821 |
Target: 5'- gGGGGACGAUGGGuGGugGcuacgaGCCAcCGCCa -3' miRNA: 3'- -CUCUUGCUACCU-CCugC------UGGUuGUGG- -5' |
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29810 | 5' | -51.5 | NC_006273.1 | + | 20900 | 0.77 | 0.706986 |
Target: 5'- gGAGAACGA-GGaAGGugGACCGugugaauCGCCg -3' miRNA: 3'- -CUCUUGCUaCC-UCCugCUGGUu------GUGG- -5' |
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29810 | 5' | -51.5 | NC_006273.1 | + | 71642 | 0.78 | 0.685988 |
Target: 5'- gGAGGACGA-GGAGGACGucgcugcuaaaccGCCGcGCGCCu -3' miRNA: 3'- -CUCUUGCUaCCUCCUGC-------------UGGU-UGUGG- -5' |
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29810 | 5' | -51.5 | NC_006273.1 | + | 212935 | 0.79 | 0.605895 |
Target: 5'- cGGGuACGAUGGAGGAUagGGCUGGCACUa -3' miRNA: 3'- -CUCuUGCUACCUCCUG--CUGGUUGUGG- -5' |
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29810 | 5' | -51.5 | NC_006273.1 | + | 94851 | 0.81 | 0.525951 |
Target: 5'- -uGGACGGUGGugGGGACGGgCGACGCCc -3' miRNA: 3'- cuCUUGCUACC--UCCUGCUgGUUGUGG- -5' |
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29810 | 5' | -51.5 | NC_006273.1 | + | 105344 | 0.72 | 0.939946 |
Target: 5'- aGAGGGCGAcgaGGAGGAugaagUGACCGugauguCGCCg -3' miRNA: 3'- -CUCUUGCUa--CCUCCU-----GCUGGUu-----GUGG- -5' |
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29810 | 5' | -51.5 | NC_006273.1 | + | 122614 | 0.72 | 0.939946 |
Target: 5'- cAGcGCGAUGGAa-GCGcCCAGCACCg -3' miRNA: 3'- cUCuUGCUACCUccUGCuGGUUGUGG- -5' |
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29810 | 5' | -51.5 | NC_006273.1 | + | 190062 | 0.7 | 0.96705 |
Target: 5'- --cGACGGcgGGGGGACGAacaccgUCGGCGCCg -3' miRNA: 3'- cucUUGCUa-CCUCCUGCU------GGUUGUGG- -5' |
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29810 | 5' | -51.5 | NC_006273.1 | + | 115549 | 0.7 | 0.96705 |
Target: 5'- aGAGGAgGAUGGGGGG-GACCGggguggugguGCugCu -3' miRNA: 3'- -CUCUUgCUACCUCCUgCUGGU----------UGugG- -5' |
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29810 | 5' | -51.5 | NC_006273.1 | + | 211176 | 0.71 | 0.960413 |
Target: 5'- -uGAuUGGUGGA-GACGGCCGGCGCg -3' miRNA: 3'- cuCUuGCUACCUcCUGCUGGUUGUGg -5' |
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29810 | 5' | -51.5 | NC_006273.1 | + | 144752 | 0.71 | 0.960413 |
Target: 5'- cAGAACGugcugcGGAGGcacgacgcgGCGGCCGugGCCu -3' miRNA: 3'- cUCUUGCua----CCUCC---------UGCUGGUugUGG- -5' |
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29810 | 5' | -51.5 | NC_006273.1 | + | 61714 | 0.71 | 0.956771 |
Target: 5'- gGAGAucggcGCGGUGGAugcccaGGACGugACCGcgaGCGCCg -3' miRNA: 3'- -CUCU-----UGCUACCU------CCUGC--UGGU---UGUGG- -5' |
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29810 | 5' | -51.5 | NC_006273.1 | + | 96230 | 0.71 | 0.956771 |
Target: 5'- --aAGCGAUGGAGGAcCGcACCcaaaguGCGCCc -3' miRNA: 3'- cucUUGCUACCUCCU-GC-UGGu-----UGUGG- -5' |
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29810 | 5' | -51.5 | NC_006273.1 | + | 196625 | 0.71 | 0.952907 |
Target: 5'- cGGGAgcuGCGccGGcGGugGGCCGGCACg -3' miRNA: 3'- -CUCU---UGCuaCCuCCugCUGGUUGUGg -5' |
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29810 | 5' | -51.5 | NC_006273.1 | + | 101698 | 0.71 | 0.944497 |
Target: 5'- uGAGAccGCuGccGGGGGGCGggucACCGGCGCCg -3' miRNA: 3'- -CUCU--UG-CuaCCUCCUGC----UGGUUGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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