miRNA display CGI


Results 41 - 60 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29810 5' -51.5 NC_006273.1 + 207461 0.76 0.792821
Target:  5'- gGGGGACGAUGGGuGGugGcuacgaGCCAcCGCCa -3'
miRNA:   3'- -CUCUUGCUACCU-CCugC------UGGUuGUGG- -5'
29810 5' -51.5 NC_006273.1 + 20900 0.77 0.706986
Target:  5'- gGAGAACGA-GGaAGGugGACCGugugaauCGCCg -3'
miRNA:   3'- -CUCUUGCUaCC-UCCugCUGGUu------GUGG- -5'
29810 5' -51.5 NC_006273.1 + 71642 0.78 0.685988
Target:  5'- gGAGGACGA-GGAGGACGucgcugcuaaaccGCCGcGCGCCu -3'
miRNA:   3'- -CUCUUGCUaCCUCCUGC-------------UGGU-UGUGG- -5'
29810 5' -51.5 NC_006273.1 + 212935 0.79 0.605895
Target:  5'- cGGGuACGAUGGAGGAUagGGCUGGCACUa -3'
miRNA:   3'- -CUCuUGCUACCUCCUG--CUGGUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 94851 0.81 0.525951
Target:  5'- -uGGACGGUGGugGGGACGGgCGACGCCc -3'
miRNA:   3'- cuCUUGCUACC--UCCUGCUgGUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 61714 0.71 0.956771
Target:  5'- gGAGAucggcGCGGUGGAugcccaGGACGugACCGcgaGCGCCg -3'
miRNA:   3'- -CUCU-----UGCUACCU------CCUGC--UGGU---UGUGG- -5'
29810 5' -51.5 NC_006273.1 + 144752 0.71 0.960413
Target:  5'- cAGAACGugcugcGGAGGcacgacgcgGCGGCCGugGCCu -3'
miRNA:   3'- cUCUUGCua----CCUCC---------UGCUGGUugUGG- -5'
29810 5' -51.5 NC_006273.1 + 127462 0.69 0.980129
Target:  5'- aGAGcaacuGCGGUGGuAGGGCG-CCAucaGCCa -3'
miRNA:   3'- -CUCu----UGCUACC-UCCUGCuGGUug-UGG- -5'
29810 5' -51.5 NC_006273.1 + 111305 0.69 0.979475
Target:  5'- cGAGGAUGAUgagguaggaggGGAGGccuggccgcauagcGCGGCC-GCGCCg -3'
miRNA:   3'- -CUCUUGCUA-----------CCUCC--------------UGCUGGuUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 29431 0.69 0.977889
Target:  5'- cGAcGACGAUGGGGauaaggucGACgGGCCAGCGCa -3'
miRNA:   3'- -CUcUUGCUACCUC--------CUG-CUGGUUGUGg -5'
29810 5' -51.5 NC_006273.1 + 136057 0.69 0.977889
Target:  5'- -cGAGCGGagauGAGGACGAC--GCACCg -3'
miRNA:   3'- cuCUUGCUac--CUCCUGCUGguUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 68422 0.69 0.977889
Target:  5'- -uGAGCGgcGGAcuGGACGugaccacccCCGACGCCa -3'
miRNA:   3'- cuCUUGCuaCCU--CCUGCu--------GGUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 163118 0.7 0.975468
Target:  5'- gGAGGAUGA-GGAGGgcuccggcugagGCGGCggaGGCACCa -3'
miRNA:   3'- -CUCUUGCUaCCUCC------------UGCUGg--UUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 56133 0.7 0.972859
Target:  5'- --aAACGGgccgcGGAGGcgGCGACCGACGCg -3'
miRNA:   3'- cucUUGCUa----CCUCC--UGCUGGUUGUGg -5'
29810 5' -51.5 NC_006273.1 + 195755 0.7 0.970055
Target:  5'- -uGGACGucGGAGGuguccgGCGGCCAugGCCc -3'
miRNA:   3'- cuCUUGCuaCCUCC------UGCUGGUugUGG- -5'
29810 5' -51.5 NC_006273.1 + 145688 0.7 0.970055
Target:  5'- -cGGACGAaggGGAGGACGAUgCGACGg- -3'
miRNA:   3'- cuCUUGCUa--CCUCCUGCUG-GUUGUgg -5'
29810 5' -51.5 NC_006273.1 + 132732 0.7 0.970055
Target:  5'- uGAGAGCGccGGGGaGACGA-CGACAgCa -3'
miRNA:   3'- -CUCUUGCuaCCUC-CUGCUgGUUGUgG- -5'
29810 5' -51.5 NC_006273.1 + 190062 0.7 0.96705
Target:  5'- --cGACGGcgGGGGGACGAacaccgUCGGCGCCg -3'
miRNA:   3'- cucUUGCUa-CCUCCUGCU------GGUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 115549 0.7 0.96705
Target:  5'- aGAGGAgGAUGGGGGG-GACCGggguggugguGCugCu -3'
miRNA:   3'- -CUCUUgCUACCUCCUgCUGGU----------UGugG- -5'
29810 5' -51.5 NC_006273.1 + 211176 0.71 0.960413
Target:  5'- -uGAuUGGUGGA-GACGGCCGGCGCg -3'
miRNA:   3'- cuCUuGCUACCUcCUGCUGGUUGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.