miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29810 5' -51.5 NC_006273.1 + 137679 1.13 0.007163
Target:  5'- aGAGAACGAUGGAGGACGACCAACACCg -3'
miRNA:   3'- -CUCUUGCUACCUCCUGCUGGUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 87690 0.7 0.972859
Target:  5'- -cGggUGGUGGcGGugGugCAGCGgCg -3'
miRNA:   3'- cuCuuGCUACCuCCugCugGUUGUgG- -5'
29810 5' -51.5 NC_006273.1 + 83153 0.7 0.972859
Target:  5'- gGAG-AUGAUGGAGcagcACGACCGgggcagcgACGCCa -3'
miRNA:   3'- -CUCuUGCUACCUCc---UGCUGGU--------UGUGG- -5'
29810 5' -51.5 NC_006273.1 + 198924 0.66 0.998673
Target:  5'- uGAGGGCGcc-GAGGACaaGACCuucuuuCACCg -3'
miRNA:   3'- -CUCUUGCuacCUCCUG--CUGGuu----GUGG- -5'
29810 5' -51.5 NC_006273.1 + 85330 0.77 0.716893
Target:  5'- uGGaAGCGGUGGAGGACGACaauaacucucGCGCCc -3'
miRNA:   3'- cUC-UUGCUACCUCCUGCUGgu--------UGUGG- -5'
29810 5' -51.5 NC_006273.1 + 140292 0.74 0.867171
Target:  5'- gGGGAGCGucacGGGAcCGGCCAACGCCc -3'
miRNA:   3'- -CUCUUGCuaccUCCU-GCUGGUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 44706 0.74 0.873755
Target:  5'- uGAGAcgacgccGCuGGUGGAGGACG-CCGAacCGCCg -3'
miRNA:   3'- -CUCU-------UG-CUACCUCCUGCuGGUU--GUGG- -5'
29810 5' -51.5 NC_006273.1 + 83692 0.74 0.874476
Target:  5'- --uGGCGGUGGAGGACaaccgccugguGGCCAACAgCu -3'
miRNA:   3'- cucUUGCUACCUCCUG-----------CUGGUUGUgG- -5'
29810 5' -51.5 NC_006273.1 + 198005 0.71 0.943156
Target:  5'- -uGAGCGuGUGGAGGACGggguggagcgggucGCCGAgACUa -3'
miRNA:   3'- cuCUUGC-UACCUCCUGC--------------UGGUUgUGG- -5'
29810 5' -51.5 NC_006273.1 + 863 0.7 0.970055
Target:  5'- -uGGACGucGGAGGuguccgGCGGCCAugGCCc -3'
miRNA:   3'- cuCUUGCuaCCUCC------UGCUGGUugUGG- -5'
29810 5' -51.5 NC_006273.1 + 1733 0.71 0.952907
Target:  5'- cGGGAgcuGCGccGGcGGugGGCCGGCACg -3'
miRNA:   3'- -CUCU---UGCuaCCuCCugCUGGUUGUGg -5'
29810 5' -51.5 NC_006273.1 + 141169 0.73 0.913666
Target:  5'- cGGAcuGCGccGGGGGGCGGCgGGCACg -3'
miRNA:   3'- cUCU--UGCuaCCUCCUGCUGgUUGUGg -5'
29810 5' -51.5 NC_006273.1 + 141042 0.81 0.516207
Target:  5'- cAGGGCGGUGGGacgggcccgcGGACgGACCGGCGCCg -3'
miRNA:   3'- cUCUUGCUACCU----------CCUG-CUGGUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 135599 0.7 0.963838
Target:  5'- uGAGGGCGAgcUGGAagaGGACGAagacagugaCGACGCUa -3'
miRNA:   3'- -CUCUUGCU--ACCU---CCUGCUg--------GUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 108509 0.79 0.646535
Target:  5'- -cGAGCuGGUGGAGGACGucgccACCGACGCa -3'
miRNA:   3'- cuCUUG-CUACCUCCUGC-----UGGUUGUGg -5'
29810 5' -51.5 NC_006273.1 + 163802 0.73 0.881567
Target:  5'- cGGGAcccACGGUGGccaacaagcGGGACGAaaAACACCg -3'
miRNA:   3'- -CUCU---UGCUACC---------UCCUGCUggUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 51119 0.7 0.970055
Target:  5'- aGGGGACGAcgaggcgGuGAGGGCuAUCGACGCCu -3'
miRNA:   3'- -CUCUUGCUa------C-CUCCUGcUGGUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 68030 0.7 0.972859
Target:  5'- gGAGGACugccggcaGGUGuGGGcuCGGCCAGCGCCg -3'
miRNA:   3'- -CUCUUG--------CUACcUCCu-GCUGGUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 136678 0.78 0.676924
Target:  5'- uGAGGACGA-GGAGacGACGACCGGCcggucGCCg -3'
miRNA:   3'- -CUCUUGCUaCCUC--CUGCUGGUUG-----UGG- -5'
29810 5' -51.5 NC_006273.1 + 164679 0.74 0.867171
Target:  5'- -cGAACG-UGGAGGGCGGuCgCAGCACg -3'
miRNA:   3'- cuCUUGCuACCUCCUGCU-G-GUUGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.