miRNA display CGI


Results 21 - 40 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29810 5' -51.5 NC_006273.1 + 156186 0.69 0.980129
Target:  5'- aGGAACGcgGGAGGGgGAUucggaggagagCAGCACg -3'
miRNA:   3'- cUCUUGCuaCCUCCUgCUG-----------GUUGUGg -5'
29810 5' -51.5 NC_006273.1 + 83153 0.7 0.972859
Target:  5'- gGAG-AUGAUGGAGcagcACGACCGgggcagcgACGCCa -3'
miRNA:   3'- -CUCuUGCUACCUCc---UGCUGGU--------UGUGG- -5'
29810 5' -51.5 NC_006273.1 + 141169 0.73 0.913666
Target:  5'- cGGAcuGCGccGGGGGGCGGCgGGCACg -3'
miRNA:   3'- cUCU--UGCuaCCUCCUGCUGgUUGUGg -5'
29810 5' -51.5 NC_006273.1 + 136678 0.78 0.676924
Target:  5'- uGAGGACGA-GGAGacGACGACCGGCcggucGCCg -3'
miRNA:   3'- -CUCUUGCUaCCUC--CUGCUGGUUG-----UGG- -5'
29810 5' -51.5 NC_006273.1 + 164630 0.68 0.992464
Target:  5'- cGGGAA-GGUGG-GGAaggccuCGuCCAACACCa -3'
miRNA:   3'- -CUCUUgCUACCuCCU------GCuGGUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 29297 0.68 0.989424
Target:  5'- --aGACGcUGGAGGGCuacgcggaucgaguGCCGACGCCg -3'
miRNA:   3'- cucUUGCuACCUCCUGc-------------UGGUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 87690 0.7 0.972859
Target:  5'- -cGggUGGUGGcGGugGugCAGCGgCg -3'
miRNA:   3'- cuCuuGCUACCuCCugCugGUUGUgG- -5'
29810 5' -51.5 NC_006273.1 + 108509 0.79 0.646535
Target:  5'- -cGAGCuGGUGGAGGACGucgccACCGACGCa -3'
miRNA:   3'- cuCUUG-CUACCUCCUGC-----UGGUUGUGg -5'
29810 5' -51.5 NC_006273.1 + 160867 0.68 0.987431
Target:  5'- cGGAAUccUGGAGGgaaaagACGAgCCGGCGCCg -3'
miRNA:   3'- cUCUUGcuACCUCC------UGCU-GGUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 141042 0.81 0.516207
Target:  5'- cAGGGCGGUGGGacgggcccgcGGACgGACCGGCGCCg -3'
miRNA:   3'- cUCUUGCUACCU----------CCUG-CUGGUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 68030 0.7 0.972859
Target:  5'- gGAGGACugccggcaGGUGuGGGcuCGGCCAGCGCCg -3'
miRNA:   3'- -CUCUUG--------CUACcUCCu-GCUGGUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 41192 0.69 0.984096
Target:  5'- cGGGGACGGggacGGGGGccuuucGCGGCgGACACg -3'
miRNA:   3'- -CUCUUGCUa---CCUCC------UGCUGgUUGUGg -5'
29810 5' -51.5 NC_006273.1 + 135599 0.7 0.963838
Target:  5'- uGAGGGCGAgcUGGAagaGGACGAagacagugaCGACGCUa -3'
miRNA:   3'- -CUCUUGCU--ACCU---CCUGCUg--------GUUGUGG- -5'
29810 5' -51.5 NC_006273.1 + 198005 0.71 0.943156
Target:  5'- -uGAGCGuGUGGAGGACGggguggagcgggucGCCGAgACUa -3'
miRNA:   3'- cuCUUGC-UACCUCCUGC--------------UGGUUgUGG- -5'
29810 5' -51.5 NC_006273.1 + 44706 0.74 0.873755
Target:  5'- uGAGAcgacgccGCuGGUGGAGGACG-CCGAacCGCCg -3'
miRNA:   3'- -CUCU-------UG-CUACCUCCUGCuGGUU--GUGG- -5'
29810 5' -51.5 NC_006273.1 + 85330 0.77 0.716893
Target:  5'- uGGaAGCGGUGGAGGACGACaauaacucucGCGCCc -3'
miRNA:   3'- cUC-UUGCUACCUCCUGCUGgu--------UGUGG- -5'
29810 5' -51.5 NC_006273.1 + 153290 0.67 0.994292
Target:  5'- cAGAACGGuacagauucuuUGGAcGGACGgACUGGCACg -3'
miRNA:   3'- cUCUUGCU-----------ACCU-CCUGC-UGGUUGUGg -5'
29810 5' -51.5 NC_006273.1 + 81139 0.67 0.993428
Target:  5'- cGAGGgguuGCgGAUGGAgcuGGGCGGCC-GCACg -3'
miRNA:   3'- -CUCU----UG-CUACCU---CCUGCUGGuUGUGg -5'
29810 5' -51.5 NC_006273.1 + 169851 0.68 0.99139
Target:  5'- uAGGACGGUGGuaccgcGGACGAagaaGAgGCCg -3'
miRNA:   3'- cUCUUGCUACCu-----CCUGCUgg--UUgUGG- -5'
29810 5' -51.5 NC_006273.1 + 179323 0.68 0.990198
Target:  5'- aGGAACGcacgcUGGAGGACGcGCUGGCugUc -3'
miRNA:   3'- cUCUUGCu----ACCUCCUGC-UGGUUGugG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.