miRNA display CGI


Results 1 - 20 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29811 3' -47.6 NC_006273.1 + 8146 0.66 0.99999
Target:  5'- -aGAGGGCcu-GUCGGAGAugGC-CGUGa -3'
miRNA:   3'- ggUUUCCGauuCAGCCUUU--UGaGCGC- -5'
29811 3' -47.6 NC_006273.1 + 186632 0.66 0.99999
Target:  5'- gCCAGAaGCUgcGAGcUCGGAcGGGCUCGUu -3'
miRNA:   3'- -GGUUUcCGA--UUC-AGCCU-UUUGAGCGc -5'
29811 3' -47.6 NC_006273.1 + 177823 0.66 0.99999
Target:  5'- ---cGGGUUuGGUCGGgcAGCgCGCGa -3'
miRNA:   3'- gguuUCCGAuUCAGCCuuUUGaGCGC- -5'
29811 3' -47.6 NC_006273.1 + 102000 0.66 0.99999
Target:  5'- gCCGuGGGGCUGAaagaGGAGGACguggggCGCGg -3'
miRNA:   3'- -GGU-UUCCGAUUcag-CCUUUUGa-----GCGC- -5'
29811 3' -47.6 NC_006273.1 + 187783 0.66 0.999986
Target:  5'- gUAgcGGCUGGGUugcucgggcacgCGGAAAAcCUCGCc -3'
miRNA:   3'- gGUuuCCGAUUCA------------GCCUUUU-GAGCGc -5'
29811 3' -47.6 NC_006273.1 + 165891 0.66 0.999974
Target:  5'- aCGAAGGUaacUGAGUCG---AugUCGCGc -3'
miRNA:   3'- gGUUUCCG---AUUCAGCcuuUugAGCGC- -5'
29811 3' -47.6 NC_006273.1 + 189466 0.66 0.999974
Target:  5'- aCGAAGuCUc-GUCGGAucGCUUGCGg -3'
miRNA:   3'- gGUUUCcGAuuCAGCCUuuUGAGCGC- -5'
29811 3' -47.6 NC_006273.1 + 71387 0.66 0.999974
Target:  5'- cCCAuGGGCUGucagcGUCGGGug---CGCGa -3'
miRNA:   3'- -GGUuUCCGAUu----CAGCCUuuugaGCGC- -5'
29811 3' -47.6 NC_006273.1 + 147119 0.67 0.999965
Target:  5'- -gGAAGGCUGugaggcuGUCGcccauguacGAAAugUCGCGu -3'
miRNA:   3'- ggUUUCCGAUu------CAGC---------CUUUugAGCGC- -5'
29811 3' -47.6 NC_006273.1 + 28019 0.67 0.999965
Target:  5'- gUAGAGGCUAug-CGGGAuGCU-GCGg -3'
miRNA:   3'- gGUUUCCGAUucaGCCUUuUGAgCGC- -5'
29811 3' -47.6 NC_006273.1 + 115973 0.67 0.999954
Target:  5'- gCGcuGGCUGAGaCGGGcgGCgCGCGu -3'
miRNA:   3'- gGUuuCCGAUUCaGCCUuuUGaGCGC- -5'
29811 3' -47.6 NC_006273.1 + 173642 0.67 0.999954
Target:  5'- aCGAAGGCgc-GaCGGc--GCUCGCGg -3'
miRNA:   3'- gGUUUCCGauuCaGCCuuuUGAGCGC- -5'
29811 3' -47.6 NC_006273.1 + 222270 0.67 0.999938
Target:  5'- aUCGGAGGUUuguggauAGUCGGGucGGAUcCGCGg -3'
miRNA:   3'- -GGUUUCCGAu------UCAGCCU--UUUGaGCGC- -5'
29811 3' -47.6 NC_006273.1 + 141097 0.67 0.999938
Target:  5'- gUggGGGgUAGGgCGGGAGGCagGCGg -3'
miRNA:   3'- gGuuUCCgAUUCaGCCUUUUGagCGC- -5'
29811 3' -47.6 NC_006273.1 + 90328 0.67 0.999919
Target:  5'- cCCGc-GGCUAGGcCG--AGACUCGCGu -3'
miRNA:   3'- -GGUuuCCGAUUCaGCcuUUUGAGCGC- -5'
29811 3' -47.6 NC_006273.1 + 134135 0.67 0.999919
Target:  5'- gCGAuGGCUAccucAGaacucUCGGAGAGgUCGCGc -3'
miRNA:   3'- gGUUuCCGAU----UC-----AGCCUUUUgAGCGC- -5'
29811 3' -47.6 NC_006273.1 + 60293 0.67 0.999895
Target:  5'- aCAGAcGGCgugccGUCGGGAGACg-GCGa -3'
miRNA:   3'- gGUUU-CCGauu--CAGCCUUUUGagCGC- -5'
29811 3' -47.6 NC_006273.1 + 73370 0.67 0.999895
Target:  5'- aCCAGcGGGCccaGAGUCGcAAAGCgCGCGg -3'
miRNA:   3'- -GGUU-UCCGa--UUCAGCcUUUUGaGCGC- -5'
29811 3' -47.6 NC_006273.1 + 171822 0.67 0.999895
Target:  5'- aCGcGGGCUGAGcUCGGGAGua--GCGg -3'
miRNA:   3'- gGUuUCCGAUUC-AGCCUUUugagCGC- -5'
29811 3' -47.6 NC_006273.1 + 221024 0.67 0.999895
Target:  5'- gCCAcAGGC--AGcgCGGGGAGCUCcgGCGg -3'
miRNA:   3'- -GGUuUCCGauUCa-GCCUUUUGAG--CGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.