miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29811 3' -47.6 NC_006273.1 + 137232 1.12 0.021206
Target:  5'- aCCAAAGGCUAAGUCGGAAAACUCGCGc -3'
miRNA:   3'- -GGUUUCCGAUUCAGCCUUUUGAGCGC- -5'
29811 3' -47.6 NC_006273.1 + 98117 0.78 0.883255
Target:  5'- gCCAGAGGCUAAGcCgaaaccguccgGGGAAGCgggCGCGa -3'
miRNA:   3'- -GGUUUCCGAUUCaG-----------CCUUUUGa--GCGC- -5'
29811 3' -47.6 NC_006273.1 + 111117 0.77 0.92726
Target:  5'- uUAAAGGCUGAGcCGGcccuCUCGCGc -3'
miRNA:   3'- gGUUUCCGAUUCaGCCuuuuGAGCGC- -5'
29811 3' -47.6 NC_006273.1 + 19363 0.75 0.966134
Target:  5'- cCC--AGGCUcccuacccGUCGGAAGACUCGCc -3'
miRNA:   3'- -GGuuUCCGAuu------CAGCCUUUUGAGCGc -5'
29811 3' -47.6 NC_006273.1 + 189145 0.74 0.979812
Target:  5'- aCUGAAGGUgaggGGGUCGcGgcGACUCGCa -3'
miRNA:   3'- -GGUUUCCGa---UUCAGC-CuuUUGAGCGc -5'
29811 3' -47.6 NC_006273.1 + 104850 0.73 0.981961
Target:  5'- cUCAAGGGCUAucucUCGGAGGGCUguuugccucacaCGCGg -3'
miRNA:   3'- -GGUUUCCGAUuc--AGCCUUUUGA------------GCGC- -5'
29811 3' -47.6 NC_006273.1 + 92172 0.73 0.983745
Target:  5'- gCAgcGGCaUGGGUCGGAAAGCagggugguaacauUCGCGc -3'
miRNA:   3'- gGUuuCCG-AUUCAGCCUUUUG-------------AGCGC- -5'
29811 3' -47.6 NC_006273.1 + 94673 0.72 0.992551
Target:  5'- cCCAcggGGGGCUGGGUCGcGGAccccgguuccuaGGCUCGUu -3'
miRNA:   3'- -GGU---UUCCGAUUCAGC-CUU------------UUGAGCGc -5'
29811 3' -47.6 NC_006273.1 + 47808 0.72 0.994325
Target:  5'- gCCucuGGGCcagGAGUCGGAacccgagaucacaGAACaUCGCGa -3'
miRNA:   3'- -GGuu-UCCGa--UUCAGCCU-------------UUUG-AGCGC- -5'
29811 3' -47.6 NC_006273.1 + 43075 0.71 0.995185
Target:  5'- aCC-GAGGaaAGGUCGGGGuuguggaaacgcAGCUCGCGg -3'
miRNA:   3'- -GGuUUCCgaUUCAGCCUU------------UUGAGCGC- -5'
29811 3' -47.6 NC_006273.1 + 87265 0.71 0.995185
Target:  5'- gCCAGAGaCaugGAGUCGGugcacaaauAACUCGCGg -3'
miRNA:   3'- -GGUUUCcGa--UUCAGCCuu-------UUGAGCGC- -5'
29811 3' -47.6 NC_006273.1 + 126538 0.71 0.996477
Target:  5'- gCGAAGGCUGugGGUagCGGGAAACcaccgUCGUGa -3'
miRNA:   3'- gGUUUCCGAU--UCA--GCCUUUUG-----AGCGC- -5'
29811 3' -47.6 NC_006273.1 + 101492 0.71 0.996477
Target:  5'- gUCGAcGGCgAGGUUGGAcuucGCUCGCGu -3'
miRNA:   3'- -GGUUuCCGaUUCAGCCUuu--UGAGCGC- -5'
29811 3' -47.6 NC_006273.1 + 61363 0.71 0.997007
Target:  5'- gUAAAGGCUAAuGUa-GAGGugUCGCGg -3'
miRNA:   3'- gGUUUCCGAUU-CAgcCUUUugAGCGC- -5'
29811 3' -47.6 NC_006273.1 + 83352 0.71 0.997007
Target:  5'- cCCGgcGGCgccguGGUgGGAGGACcCGCGg -3'
miRNA:   3'- -GGUuuCCGau---UCAgCCUUUUGaGCGC- -5'
29811 3' -47.6 NC_006273.1 + 207337 0.71 0.997469
Target:  5'- --cGGGGCUGGGUggagaGGGAAGgUCGCGc -3'
miRNA:   3'- gguUUCCGAUUCAg----CCUUUUgAGCGC- -5'
29811 3' -47.6 NC_006273.1 + 107337 0.71 0.997469
Target:  5'- aCCAAAGGCUauuGAGggUGGAuAGAUUUGCa -3'
miRNA:   3'- -GGUUUCCGA---UUCa-GCCU-UUUGAGCGc -5'
29811 3' -47.6 NC_006273.1 + 212559 0.7 0.998514
Target:  5'- uUCAAGcGGCaggucGGUUGGAGGACUUGCu -3'
miRNA:   3'- -GGUUU-CCGau---UCAGCCUUUUGAGCGc -5'
29811 3' -47.6 NC_006273.1 + 13820 0.69 0.999322
Target:  5'- aCCAGAuGGCgacgGAcGUCGGGAccGACggaCGCGa -3'
miRNA:   3'- -GGUUU-CCGa---UU-CAGCCUU--UUGa--GCGC- -5'
29811 3' -47.6 NC_006273.1 + 200120 0.69 0.99945
Target:  5'- aCGAugcuGGUUAAGUUGGccGAGACgcugCGCGg -3'
miRNA:   3'- gGUUu---CCGAUUCAGCC--UUUUGa---GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.