Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29811 | 3' | -47.6 | NC_006273.1 | + | 200120 | 0.69 | 0.99945 |
Target: 5'- aCGAugcuGGUUAAGUUGGccGAGACgcugCGCGg -3' miRNA: 3'- gGUUu---CCGAUUCAGCC--UUUUGa---GCGC- -5' |
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29811 | 3' | -47.6 | NC_006273.1 | + | 14137 | 0.69 | 0.999496 |
Target: 5'- uCCGAAcGCUAGGUCGGuucucAGACcgaggcaaaucaacgUCGCGa -3' miRNA: 3'- -GGUUUcCGAUUCAGCCu----UUUG---------------AGCGC- -5' |
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29811 | 3' | -47.6 | NC_006273.1 | + | 114193 | 0.68 | 0.999646 |
Target: 5'- uUCGAAGGCUAcucuauGUCGGccga-UCGCGc -3' miRNA: 3'- -GGUUUCCGAUu-----CAGCCuuuugAGCGC- -5' |
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29811 | 3' | -47.6 | NC_006273.1 | + | 57482 | 0.68 | 0.999646 |
Target: 5'- gCCGuGGuGCUGGGUcagugccagCGGGAAAC-CGCGg -3' miRNA: 3'- -GGUuUC-CGAUUCA---------GCCUUUUGaGCGC- -5' |
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29811 | 3' | -47.6 | NC_006273.1 | + | 167942 | 0.68 | 0.999778 |
Target: 5'- aCAGAGGCUGAG--GGGAAACccCGUa -3' miRNA: 3'- gGUUUCCGAUUCagCCUUUUGa-GCGc -5' |
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29811 | 3' | -47.6 | NC_006273.1 | + | 151592 | 0.68 | 0.999778 |
Target: 5'- gCCGcAGGCgaaAGGUgCGGAAAuACUCGUu -3' miRNA: 3'- -GGUuUCCGa--UUCA-GCCUUU-UGAGCGc -5' |
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29811 | 3' | -47.6 | NC_006273.1 | + | 193771 | 0.68 | 0.999812 |
Target: 5'- gCCAGGGGCUGGGUgugcgaaaccggugUGGAAGccgaggagGCUauggCGCGg -3' miRNA: 3'- -GGUUUCCGAUUCA--------------GCCUUU--------UGA----GCGC- -5' |
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29811 | 3' | -47.6 | NC_006273.1 | + | 129855 | 0.68 | 0.999825 |
Target: 5'- uCCcGAGGCac-GUCGGGGcuGugUCGCa -3' miRNA: 3'- -GGuUUCCGauuCAGCCUU--UugAGCGc -5' |
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29811 | 3' | -47.6 | NC_006273.1 | + | 65192 | 0.68 | 0.999825 |
Target: 5'- aCCAGAGGCUGAGaUCGccg----CGCGu -3' miRNA: 3'- -GGUUUCCGAUUC-AGCcuuuugaGCGC- -5' |
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29811 | 3' | -47.6 | NC_006273.1 | + | 103562 | 0.68 | 0.999861 |
Target: 5'- gCCGugcGGGCUggucgccGAGUgGGggGAUUCGuCGa -3' miRNA: 3'- -GGUu--UCCGA-------UUCAgCCuuUUGAGC-GC- -5' |
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29811 | 3' | -47.6 | NC_006273.1 | + | 107015 | 0.68 | 0.999864 |
Target: 5'- uCCGAcuGGGCgaaaaaacGGUgauuaUGGAAAACUUGCGg -3' miRNA: 3'- -GGUU--UCCGau------UCA-----GCCUUUUGAGCGC- -5' |
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29811 | 3' | -47.6 | NC_006273.1 | + | 71998 | 0.67 | 0.999895 |
Target: 5'- uCCAAAGaGCguc-UCGGAgacGAGCUCGUa -3' miRNA: 3'- -GGUUUC-CGauucAGCCU---UUUGAGCGc -5' |
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29811 | 3' | -47.6 | NC_006273.1 | + | 60293 | 0.67 | 0.999895 |
Target: 5'- aCAGAcGGCgugccGUCGGGAGACg-GCGa -3' miRNA: 3'- gGUUU-CCGauu--CAGCCUUUUGagCGC- -5' |
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29811 | 3' | -47.6 | NC_006273.1 | + | 73370 | 0.67 | 0.999895 |
Target: 5'- aCCAGcGGGCccaGAGUCGcAAAGCgCGCGg -3' miRNA: 3'- -GGUU-UCCGa--UUCAGCcUUUUGaGCGC- -5' |
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29811 | 3' | -47.6 | NC_006273.1 | + | 171822 | 0.67 | 0.999895 |
Target: 5'- aCGcGGGCUGAGcUCGGGAGua--GCGg -3' miRNA: 3'- gGUuUCCGAUUC-AGCCUUUugagCGC- -5' |
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29811 | 3' | -47.6 | NC_006273.1 | + | 221024 | 0.67 | 0.999895 |
Target: 5'- gCCAcAGGC--AGcgCGGGGAGCUCcgGCGg -3' miRNA: 3'- -GGUuUCCGauUCa-GCCUUUUGAG--CGC- -5' |
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29811 | 3' | -47.6 | NC_006273.1 | + | 90328 | 0.67 | 0.999919 |
Target: 5'- cCCGc-GGCUAGGcCG--AGACUCGCGu -3' miRNA: 3'- -GGUuuCCGAUUCaGCcuUUUGAGCGC- -5' |
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29811 | 3' | -47.6 | NC_006273.1 | + | 134135 | 0.67 | 0.999919 |
Target: 5'- gCGAuGGCUAccucAGaacucUCGGAGAGgUCGCGc -3' miRNA: 3'- gGUUuCCGAU----UC-----AGCCUUUUgAGCGC- -5' |
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29811 | 3' | -47.6 | NC_006273.1 | + | 141097 | 0.67 | 0.999938 |
Target: 5'- gUggGGGgUAGGgCGGGAGGCagGCGg -3' miRNA: 3'- gGuuUCCgAUUCaGCCUUUUGagCGC- -5' |
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29811 | 3' | -47.6 | NC_006273.1 | + | 222270 | 0.67 | 0.999938 |
Target: 5'- aUCGGAGGUUuguggauAGUCGGGucGGAUcCGCGg -3' miRNA: 3'- -GGUUUCCGAu------UCAGCCU--UUUGaGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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