miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29811 3' -47.6 NC_006273.1 + 8146 0.66 0.99999
Target:  5'- -aGAGGGCcu-GUCGGAGAugGC-CGUGa -3'
miRNA:   3'- ggUUUCCGauuCAGCCUUU--UGaGCGC- -5'
29811 3' -47.6 NC_006273.1 + 13820 0.69 0.999322
Target:  5'- aCCAGAuGGCgacgGAcGUCGGGAccGACggaCGCGa -3'
miRNA:   3'- -GGUUU-CCGa---UU-CAGCCUU--UUGa--GCGC- -5'
29811 3' -47.6 NC_006273.1 + 14137 0.69 0.999496
Target:  5'- uCCGAAcGCUAGGUCGGuucucAGACcgaggcaaaucaacgUCGCGa -3'
miRNA:   3'- -GGUUUcCGAUUCAGCCu----UUUG---------------AGCGC- -5'
29811 3' -47.6 NC_006273.1 + 19363 0.75 0.966134
Target:  5'- cCC--AGGCUcccuacccGUCGGAAGACUCGCc -3'
miRNA:   3'- -GGuuUCCGAuu------CAGCCUUUUGAGCGc -5'
29811 3' -47.6 NC_006273.1 + 28019 0.67 0.999965
Target:  5'- gUAGAGGCUAug-CGGGAuGCU-GCGg -3'
miRNA:   3'- gGUUUCCGAUucaGCCUUuUGAgCGC- -5'
29811 3' -47.6 NC_006273.1 + 43075 0.71 0.995185
Target:  5'- aCC-GAGGaaAGGUCGGGGuuguggaaacgcAGCUCGCGg -3'
miRNA:   3'- -GGuUUCCgaUUCAGCCUU------------UUGAGCGC- -5'
29811 3' -47.6 NC_006273.1 + 47808 0.72 0.994325
Target:  5'- gCCucuGGGCcagGAGUCGGAacccgagaucacaGAACaUCGCGa -3'
miRNA:   3'- -GGuu-UCCGa--UUCAGCCU-------------UUUG-AGCGC- -5'
29811 3' -47.6 NC_006273.1 + 57482 0.68 0.999646
Target:  5'- gCCGuGGuGCUGGGUcagugccagCGGGAAAC-CGCGg -3'
miRNA:   3'- -GGUuUC-CGAUUCA---------GCCUUUUGaGCGC- -5'
29811 3' -47.6 NC_006273.1 + 60293 0.67 0.999895
Target:  5'- aCAGAcGGCgugccGUCGGGAGACg-GCGa -3'
miRNA:   3'- gGUUU-CCGauu--CAGCCUUUUGagCGC- -5'
29811 3' -47.6 NC_006273.1 + 61363 0.71 0.997007
Target:  5'- gUAAAGGCUAAuGUa-GAGGugUCGCGg -3'
miRNA:   3'- gGUUUCCGAUU-CAgcCUUUugAGCGC- -5'
29811 3' -47.6 NC_006273.1 + 65192 0.68 0.999825
Target:  5'- aCCAGAGGCUGAGaUCGccg----CGCGu -3'
miRNA:   3'- -GGUUUCCGAUUC-AGCcuuuugaGCGC- -5'
29811 3' -47.6 NC_006273.1 + 71387 0.66 0.999974
Target:  5'- cCCAuGGGCUGucagcGUCGGGug---CGCGa -3'
miRNA:   3'- -GGUuUCCGAUu----CAGCCUuuugaGCGC- -5'
29811 3' -47.6 NC_006273.1 + 71998 0.67 0.999895
Target:  5'- uCCAAAGaGCguc-UCGGAgacGAGCUCGUa -3'
miRNA:   3'- -GGUUUC-CGauucAGCCU---UUUGAGCGc -5'
29811 3' -47.6 NC_006273.1 + 73370 0.67 0.999895
Target:  5'- aCCAGcGGGCccaGAGUCGcAAAGCgCGCGg -3'
miRNA:   3'- -GGUU-UCCGa--UUCAGCcUUUUGaGCGC- -5'
29811 3' -47.6 NC_006273.1 + 83352 0.71 0.997007
Target:  5'- cCCGgcGGCgccguGGUgGGAGGACcCGCGg -3'
miRNA:   3'- -GGUuuCCGau---UCAgCCUUUUGaGCGC- -5'
29811 3' -47.6 NC_006273.1 + 87265 0.71 0.995185
Target:  5'- gCCAGAGaCaugGAGUCGGugcacaaauAACUCGCGg -3'
miRNA:   3'- -GGUUUCcGa--UUCAGCCuu-------UUGAGCGC- -5'
29811 3' -47.6 NC_006273.1 + 90328 0.67 0.999919
Target:  5'- cCCGc-GGCUAGGcCG--AGACUCGCGu -3'
miRNA:   3'- -GGUuuCCGAUUCaGCcuUUUGAGCGC- -5'
29811 3' -47.6 NC_006273.1 + 92172 0.73 0.983745
Target:  5'- gCAgcGGCaUGGGUCGGAAAGCagggugguaacauUCGCGc -3'
miRNA:   3'- gGUuuCCG-AUUCAGCCUUUUG-------------AGCGC- -5'
29811 3' -47.6 NC_006273.1 + 94673 0.72 0.992551
Target:  5'- cCCAcggGGGGCUGGGUCGcGGAccccgguuccuaGGCUCGUu -3'
miRNA:   3'- -GGU---UUCCGAUUCAGC-CUU------------UUGAGCGc -5'
29811 3' -47.6 NC_006273.1 + 98117 0.78 0.883255
Target:  5'- gCCAGAGGCUAAGcCgaaaccguccgGGGAAGCgggCGCGa -3'
miRNA:   3'- -GGUUUCCGAUUCaG-----------CCUUUUGa--GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.