miRNA display CGI


Results 21 - 40 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29811 3' -47.6 NC_006273.1 + 101492 0.71 0.996477
Target:  5'- gUCGAcGGCgAGGUUGGAcuucGCUCGCGu -3'
miRNA:   3'- -GGUUuCCGaUUCAGCCUuu--UGAGCGC- -5'
29811 3' -47.6 NC_006273.1 + 102000 0.66 0.99999
Target:  5'- gCCGuGGGGCUGAaagaGGAGGACguggggCGCGg -3'
miRNA:   3'- -GGU-UUCCGAUUcag-CCUUUUGa-----GCGC- -5'
29811 3' -47.6 NC_006273.1 + 103562 0.68 0.999861
Target:  5'- gCCGugcGGGCUggucgccGAGUgGGggGAUUCGuCGa -3'
miRNA:   3'- -GGUu--UCCGA-------UUCAgCCuuUUGAGC-GC- -5'
29811 3' -47.6 NC_006273.1 + 104850 0.73 0.981961
Target:  5'- cUCAAGGGCUAucucUCGGAGGGCUguuugccucacaCGCGg -3'
miRNA:   3'- -GGUUUCCGAUuc--AGCCUUUUGA------------GCGC- -5'
29811 3' -47.6 NC_006273.1 + 107015 0.68 0.999864
Target:  5'- uCCGAcuGGGCgaaaaaacGGUgauuaUGGAAAACUUGCGg -3'
miRNA:   3'- -GGUU--UCCGau------UCA-----GCCUUUUGAGCGC- -5'
29811 3' -47.6 NC_006273.1 + 107337 0.71 0.997469
Target:  5'- aCCAAAGGCUauuGAGggUGGAuAGAUUUGCa -3'
miRNA:   3'- -GGUUUCCGA---UUCa-GCCU-UUUGAGCGc -5'
29811 3' -47.6 NC_006273.1 + 111117 0.77 0.92726
Target:  5'- uUAAAGGCUGAGcCGGcccuCUCGCGc -3'
miRNA:   3'- gGUUUCCGAUUCaGCCuuuuGAGCGC- -5'
29811 3' -47.6 NC_006273.1 + 114193 0.68 0.999646
Target:  5'- uUCGAAGGCUAcucuauGUCGGccga-UCGCGc -3'
miRNA:   3'- -GGUUUCCGAUu-----CAGCCuuuugAGCGC- -5'
29811 3' -47.6 NC_006273.1 + 115973 0.67 0.999954
Target:  5'- gCGcuGGCUGAGaCGGGcgGCgCGCGu -3'
miRNA:   3'- gGUuuCCGAUUCaGCCUuuUGaGCGC- -5'
29811 3' -47.6 NC_006273.1 + 126538 0.71 0.996477
Target:  5'- gCGAAGGCUGugGGUagCGGGAAACcaccgUCGUGa -3'
miRNA:   3'- gGUUUCCGAU--UCA--GCCUUUUG-----AGCGC- -5'
29811 3' -47.6 NC_006273.1 + 129855 0.68 0.999825
Target:  5'- uCCcGAGGCac-GUCGGGGcuGugUCGCa -3'
miRNA:   3'- -GGuUUCCGauuCAGCCUU--UugAGCGc -5'
29811 3' -47.6 NC_006273.1 + 134135 0.67 0.999919
Target:  5'- gCGAuGGCUAccucAGaacucUCGGAGAGgUCGCGc -3'
miRNA:   3'- gGUUuCCGAU----UC-----AGCCUUUUgAGCGC- -5'
29811 3' -47.6 NC_006273.1 + 137232 1.12 0.021206
Target:  5'- aCCAAAGGCUAAGUCGGAAAACUCGCGc -3'
miRNA:   3'- -GGUUUCCGAUUCAGCCUUUUGAGCGC- -5'
29811 3' -47.6 NC_006273.1 + 141097 0.67 0.999938
Target:  5'- gUggGGGgUAGGgCGGGAGGCagGCGg -3'
miRNA:   3'- gGuuUCCgAUUCaGCCUUUUGagCGC- -5'
29811 3' -47.6 NC_006273.1 + 147119 0.67 0.999965
Target:  5'- -gGAAGGCUGugaggcuGUCGcccauguacGAAAugUCGCGu -3'
miRNA:   3'- ggUUUCCGAUu------CAGC---------CUUUugAGCGC- -5'
29811 3' -47.6 NC_006273.1 + 151592 0.68 0.999778
Target:  5'- gCCGcAGGCgaaAGGUgCGGAAAuACUCGUu -3'
miRNA:   3'- -GGUuUCCGa--UUCA-GCCUUU-UGAGCGc -5'
29811 3' -47.6 NC_006273.1 + 165891 0.66 0.999974
Target:  5'- aCGAAGGUaacUGAGUCG---AugUCGCGc -3'
miRNA:   3'- gGUUUCCG---AUUCAGCcuuUugAGCGC- -5'
29811 3' -47.6 NC_006273.1 + 167942 0.68 0.999778
Target:  5'- aCAGAGGCUGAG--GGGAAACccCGUa -3'
miRNA:   3'- gGUUUCCGAUUCagCCUUUUGa-GCGc -5'
29811 3' -47.6 NC_006273.1 + 171822 0.67 0.999895
Target:  5'- aCGcGGGCUGAGcUCGGGAGua--GCGg -3'
miRNA:   3'- gGUuUCCGAUUC-AGCCUUUugagCGC- -5'
29811 3' -47.6 NC_006273.1 + 173642 0.67 0.999954
Target:  5'- aCGAAGGCgc-GaCGGc--GCUCGCGg -3'
miRNA:   3'- gGUUUCCGauuCaGCCuuuUGAGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.