miRNA display CGI


Results 41 - 52 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29811 3' -47.6 NC_006273.1 + 177823 0.66 0.99999
Target:  5'- ---cGGGUUuGGUCGGgcAGCgCGCGa -3'
miRNA:   3'- gguuUCCGAuUCAGCCuuUUGaGCGC- -5'
29811 3' -47.6 NC_006273.1 + 186632 0.66 0.99999
Target:  5'- gCCAGAaGCUgcGAGcUCGGAcGGGCUCGUu -3'
miRNA:   3'- -GGUUUcCGA--UUC-AGCCU-UUUGAGCGc -5'
29811 3' -47.6 NC_006273.1 + 187783 0.66 0.999986
Target:  5'- gUAgcGGCUGGGUugcucgggcacgCGGAAAAcCUCGCc -3'
miRNA:   3'- gGUuuCCGAUUCA------------GCCUUUU-GAGCGc -5'
29811 3' -47.6 NC_006273.1 + 189145 0.74 0.979812
Target:  5'- aCUGAAGGUgaggGGGUCGcGgcGACUCGCa -3'
miRNA:   3'- -GGUUUCCGa---UUCAGC-CuuUUGAGCGc -5'
29811 3' -47.6 NC_006273.1 + 189466 0.66 0.999974
Target:  5'- aCGAAGuCUc-GUCGGAucGCUUGCGg -3'
miRNA:   3'- gGUUUCcGAuuCAGCCUuuUGAGCGC- -5'
29811 3' -47.6 NC_006273.1 + 193771 0.68 0.999812
Target:  5'- gCCAGGGGCUGGGUgugcgaaaccggugUGGAAGccgaggagGCUauggCGCGg -3'
miRNA:   3'- -GGUUUCCGAUUCA--------------GCCUUU--------UGA----GCGC- -5'
29811 3' -47.6 NC_006273.1 + 200120 0.69 0.99945
Target:  5'- aCGAugcuGGUUAAGUUGGccGAGACgcugCGCGg -3'
miRNA:   3'- gGUUu---CCGAUUCAGCC--UUUUGa---GCGC- -5'
29811 3' -47.6 NC_006273.1 + 207337 0.71 0.997469
Target:  5'- --cGGGGCUGGGUggagaGGGAAGgUCGCGc -3'
miRNA:   3'- gguUUCCGAUUCAg----CCUUUUgAGCGC- -5'
29811 3' -47.6 NC_006273.1 + 210661 0.69 0.99945
Target:  5'- aUCGAAGGUgggAAGUagCGGAuugcauugAGGCUCGCu -3'
miRNA:   3'- -GGUUUCCGa--UUCA--GCCU--------UUUGAGCGc -5'
29811 3' -47.6 NC_006273.1 + 212559 0.7 0.998514
Target:  5'- uUCAAGcGGCaggucGGUUGGAGGACUUGCu -3'
miRNA:   3'- -GGUUU-CCGau---UCAGCCUUUUGAGCGc -5'
29811 3' -47.6 NC_006273.1 + 221024 0.67 0.999895
Target:  5'- gCCAcAGGC--AGcgCGGGGAGCUCcgGCGg -3'
miRNA:   3'- -GGUuUCCGauUCa-GCCUUUUGAG--CGC- -5'
29811 3' -47.6 NC_006273.1 + 222270 0.67 0.999938
Target:  5'- aUCGGAGGUUuguggauAGUCGGGucGGAUcCGCGg -3'
miRNA:   3'- -GGUUUCCGAu------UCAGCCU--UUUGaGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.