miRNA display CGI


Results 1 - 20 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29811 3' -47.6 NC_006273.1 + 222270 0.67 0.999938
Target:  5'- aUCGGAGGUUuguggauAGUCGGGucGGAUcCGCGg -3'
miRNA:   3'- -GGUUUCCGAu------UCAGCCU--UUUGaGCGC- -5'
29811 3' -47.6 NC_006273.1 + 221024 0.67 0.999895
Target:  5'- gCCAcAGGC--AGcgCGGGGAGCUCcgGCGg -3'
miRNA:   3'- -GGUuUCCGauUCa-GCCUUUUGAG--CGC- -5'
29811 3' -47.6 NC_006273.1 + 212559 0.7 0.998514
Target:  5'- uUCAAGcGGCaggucGGUUGGAGGACUUGCu -3'
miRNA:   3'- -GGUUU-CCGau---UCAGCCUUUUGAGCGc -5'
29811 3' -47.6 NC_006273.1 + 210661 0.69 0.99945
Target:  5'- aUCGAAGGUgggAAGUagCGGAuugcauugAGGCUCGCu -3'
miRNA:   3'- -GGUUUCCGa--UUCA--GCCU--------UUUGAGCGc -5'
29811 3' -47.6 NC_006273.1 + 207337 0.71 0.997469
Target:  5'- --cGGGGCUGGGUggagaGGGAAGgUCGCGc -3'
miRNA:   3'- gguUUCCGAUUCAg----CCUUUUgAGCGC- -5'
29811 3' -47.6 NC_006273.1 + 200120 0.69 0.99945
Target:  5'- aCGAugcuGGUUAAGUUGGccGAGACgcugCGCGg -3'
miRNA:   3'- gGUUu---CCGAUUCAGCC--UUUUGa---GCGC- -5'
29811 3' -47.6 NC_006273.1 + 193771 0.68 0.999812
Target:  5'- gCCAGGGGCUGGGUgugcgaaaccggugUGGAAGccgaggagGCUauggCGCGg -3'
miRNA:   3'- -GGUUUCCGAUUCA--------------GCCUUU--------UGA----GCGC- -5'
29811 3' -47.6 NC_006273.1 + 189466 0.66 0.999974
Target:  5'- aCGAAGuCUc-GUCGGAucGCUUGCGg -3'
miRNA:   3'- gGUUUCcGAuuCAGCCUuuUGAGCGC- -5'
29811 3' -47.6 NC_006273.1 + 189145 0.74 0.979812
Target:  5'- aCUGAAGGUgaggGGGUCGcGgcGACUCGCa -3'
miRNA:   3'- -GGUUUCCGa---UUCAGC-CuuUUGAGCGc -5'
29811 3' -47.6 NC_006273.1 + 187783 0.66 0.999986
Target:  5'- gUAgcGGCUGGGUugcucgggcacgCGGAAAAcCUCGCc -3'
miRNA:   3'- gGUuuCCGAUUCA------------GCCUUUU-GAGCGc -5'
29811 3' -47.6 NC_006273.1 + 186632 0.66 0.99999
Target:  5'- gCCAGAaGCUgcGAGcUCGGAcGGGCUCGUu -3'
miRNA:   3'- -GGUUUcCGA--UUC-AGCCU-UUUGAGCGc -5'
29811 3' -47.6 NC_006273.1 + 177823 0.66 0.99999
Target:  5'- ---cGGGUUuGGUCGGgcAGCgCGCGa -3'
miRNA:   3'- gguuUCCGAuUCAGCCuuUUGaGCGC- -5'
29811 3' -47.6 NC_006273.1 + 173642 0.67 0.999954
Target:  5'- aCGAAGGCgc-GaCGGc--GCUCGCGg -3'
miRNA:   3'- gGUUUCCGauuCaGCCuuuUGAGCGC- -5'
29811 3' -47.6 NC_006273.1 + 171822 0.67 0.999895
Target:  5'- aCGcGGGCUGAGcUCGGGAGua--GCGg -3'
miRNA:   3'- gGUuUCCGAUUC-AGCCUUUugagCGC- -5'
29811 3' -47.6 NC_006273.1 + 167942 0.68 0.999778
Target:  5'- aCAGAGGCUGAG--GGGAAACccCGUa -3'
miRNA:   3'- gGUUUCCGAUUCagCCUUUUGa-GCGc -5'
29811 3' -47.6 NC_006273.1 + 165891 0.66 0.999974
Target:  5'- aCGAAGGUaacUGAGUCG---AugUCGCGc -3'
miRNA:   3'- gGUUUCCG---AUUCAGCcuuUugAGCGC- -5'
29811 3' -47.6 NC_006273.1 + 151592 0.68 0.999778
Target:  5'- gCCGcAGGCgaaAGGUgCGGAAAuACUCGUu -3'
miRNA:   3'- -GGUuUCCGa--UUCA-GCCUUU-UGAGCGc -5'
29811 3' -47.6 NC_006273.1 + 147119 0.67 0.999965
Target:  5'- -gGAAGGCUGugaggcuGUCGcccauguacGAAAugUCGCGu -3'
miRNA:   3'- ggUUUCCGAUu------CAGC---------CUUUugAGCGC- -5'
29811 3' -47.6 NC_006273.1 + 141097 0.67 0.999938
Target:  5'- gUggGGGgUAGGgCGGGAGGCagGCGg -3'
miRNA:   3'- gGuuUCCgAUUCaGCCUUUUGagCGC- -5'
29811 3' -47.6 NC_006273.1 + 137232 1.12 0.021206
Target:  5'- aCCAAAGGCUAAGUCGGAAAACUCGCGc -3'
miRNA:   3'- -GGUUUCCGAUUCAGCCUUUUGAGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.