miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29811 3' -47.6 NC_006273.1 + 134135 0.67 0.999919
Target:  5'- gCGAuGGCUAccucAGaacucUCGGAGAGgUCGCGc -3'
miRNA:   3'- gGUUuCCGAU----UC-----AGCCUUUUgAGCGC- -5'
29811 3' -47.6 NC_006273.1 + 129855 0.68 0.999825
Target:  5'- uCCcGAGGCac-GUCGGGGcuGugUCGCa -3'
miRNA:   3'- -GGuUUCCGauuCAGCCUU--UugAGCGc -5'
29811 3' -47.6 NC_006273.1 + 126538 0.71 0.996477
Target:  5'- gCGAAGGCUGugGGUagCGGGAAACcaccgUCGUGa -3'
miRNA:   3'- gGUUUCCGAU--UCA--GCCUUUUG-----AGCGC- -5'
29811 3' -47.6 NC_006273.1 + 115973 0.67 0.999954
Target:  5'- gCGcuGGCUGAGaCGGGcgGCgCGCGu -3'
miRNA:   3'- gGUuuCCGAUUCaGCCUuuUGaGCGC- -5'
29811 3' -47.6 NC_006273.1 + 114193 0.68 0.999646
Target:  5'- uUCGAAGGCUAcucuauGUCGGccga-UCGCGc -3'
miRNA:   3'- -GGUUUCCGAUu-----CAGCCuuuugAGCGC- -5'
29811 3' -47.6 NC_006273.1 + 111117 0.77 0.92726
Target:  5'- uUAAAGGCUGAGcCGGcccuCUCGCGc -3'
miRNA:   3'- gGUUUCCGAUUCaGCCuuuuGAGCGC- -5'
29811 3' -47.6 NC_006273.1 + 107337 0.71 0.997469
Target:  5'- aCCAAAGGCUauuGAGggUGGAuAGAUUUGCa -3'
miRNA:   3'- -GGUUUCCGA---UUCa-GCCU-UUUGAGCGc -5'
29811 3' -47.6 NC_006273.1 + 107015 0.68 0.999864
Target:  5'- uCCGAcuGGGCgaaaaaacGGUgauuaUGGAAAACUUGCGg -3'
miRNA:   3'- -GGUU--UCCGau------UCA-----GCCUUUUGAGCGC- -5'
29811 3' -47.6 NC_006273.1 + 104850 0.73 0.981961
Target:  5'- cUCAAGGGCUAucucUCGGAGGGCUguuugccucacaCGCGg -3'
miRNA:   3'- -GGUUUCCGAUuc--AGCCUUUUGA------------GCGC- -5'
29811 3' -47.6 NC_006273.1 + 103562 0.68 0.999861
Target:  5'- gCCGugcGGGCUggucgccGAGUgGGggGAUUCGuCGa -3'
miRNA:   3'- -GGUu--UCCGA-------UUCAgCCuuUUGAGC-GC- -5'
29811 3' -47.6 NC_006273.1 + 102000 0.66 0.99999
Target:  5'- gCCGuGGGGCUGAaagaGGAGGACguggggCGCGg -3'
miRNA:   3'- -GGU-UUCCGAUUcag-CCUUUUGa-----GCGC- -5'
29811 3' -47.6 NC_006273.1 + 101492 0.71 0.996477
Target:  5'- gUCGAcGGCgAGGUUGGAcuucGCUCGCGu -3'
miRNA:   3'- -GGUUuCCGaUUCAGCCUuu--UGAGCGC- -5'
29811 3' -47.6 NC_006273.1 + 98117 0.78 0.883255
Target:  5'- gCCAGAGGCUAAGcCgaaaccguccgGGGAAGCgggCGCGa -3'
miRNA:   3'- -GGUUUCCGAUUCaG-----------CCUUUUGa--GCGC- -5'
29811 3' -47.6 NC_006273.1 + 94673 0.72 0.992551
Target:  5'- cCCAcggGGGGCUGGGUCGcGGAccccgguuccuaGGCUCGUu -3'
miRNA:   3'- -GGU---UUCCGAUUCAGC-CUU------------UUGAGCGc -5'
29811 3' -47.6 NC_006273.1 + 92172 0.73 0.983745
Target:  5'- gCAgcGGCaUGGGUCGGAAAGCagggugguaacauUCGCGc -3'
miRNA:   3'- gGUuuCCG-AUUCAGCCUUUUG-------------AGCGC- -5'
29811 3' -47.6 NC_006273.1 + 90328 0.67 0.999919
Target:  5'- cCCGc-GGCUAGGcCG--AGACUCGCGu -3'
miRNA:   3'- -GGUuuCCGAUUCaGCcuUUUGAGCGC- -5'
29811 3' -47.6 NC_006273.1 + 87265 0.71 0.995185
Target:  5'- gCCAGAGaCaugGAGUCGGugcacaaauAACUCGCGg -3'
miRNA:   3'- -GGUUUCcGa--UUCAGCCuu-------UUGAGCGC- -5'
29811 3' -47.6 NC_006273.1 + 83352 0.71 0.997007
Target:  5'- cCCGgcGGCgccguGGUgGGAGGACcCGCGg -3'
miRNA:   3'- -GGUuuCCGau---UCAgCCUUUUGaGCGC- -5'
29811 3' -47.6 NC_006273.1 + 73370 0.67 0.999895
Target:  5'- aCCAGcGGGCccaGAGUCGcAAAGCgCGCGg -3'
miRNA:   3'- -GGUU-UCCGa--UUCAGCcUUUUGaGCGC- -5'
29811 3' -47.6 NC_006273.1 + 71998 0.67 0.999895
Target:  5'- uCCAAAGaGCguc-UCGGAgacGAGCUCGUa -3'
miRNA:   3'- -GGUUUC-CGauucAGCCU---UUUGAGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.