miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29811 3' -47.6 NC_006273.1 + 71998 0.67 0.999895
Target:  5'- uCCAAAGaGCguc-UCGGAgacGAGCUCGUa -3'
miRNA:   3'- -GGUUUC-CGauucAGCCU---UUUGAGCGc -5'
29811 3' -47.6 NC_006273.1 + 167942 0.68 0.999778
Target:  5'- aCAGAGGCUGAG--GGGAAACccCGUa -3'
miRNA:   3'- gGUUUCCGAUUCagCCUUUUGa-GCGc -5'
29811 3' -47.6 NC_006273.1 + 193771 0.68 0.999812
Target:  5'- gCCAGGGGCUGGGUgugcgaaaccggugUGGAAGccgaggagGCUauggCGCGg -3'
miRNA:   3'- -GGUUUCCGAUUCA--------------GCCUUU--------UGA----GCGC- -5'
29811 3' -47.6 NC_006273.1 + 65192 0.68 0.999825
Target:  5'- aCCAGAGGCUGAGaUCGccg----CGCGu -3'
miRNA:   3'- -GGUUUCCGAUUC-AGCcuuuugaGCGC- -5'
29811 3' -47.6 NC_006273.1 + 103562 0.68 0.999861
Target:  5'- gCCGugcGGGCUggucgccGAGUgGGggGAUUCGuCGa -3'
miRNA:   3'- -GGUu--UCCGA-------UUCAgCCuuUUGAGC-GC- -5'
29811 3' -47.6 NC_006273.1 + 60293 0.67 0.999895
Target:  5'- aCAGAcGGCgugccGUCGGGAGACg-GCGa -3'
miRNA:   3'- gGUUU-CCGauu--CAGCCUUUUGagCGC- -5'
29811 3' -47.6 NC_006273.1 + 73370 0.67 0.999895
Target:  5'- aCCAGcGGGCccaGAGUCGcAAAGCgCGCGg -3'
miRNA:   3'- -GGUU-UCCGa--UUCAGCcUUUUGaGCGC- -5'
29811 3' -47.6 NC_006273.1 + 171822 0.67 0.999895
Target:  5'- aCGcGGGCUGAGcUCGGGAGua--GCGg -3'
miRNA:   3'- gGUuUCCGAUUC-AGCCUUUugagCGC- -5'
29811 3' -47.6 NC_006273.1 + 221024 0.67 0.999895
Target:  5'- gCCAcAGGC--AGcgCGGGGAGCUCcgGCGg -3'
miRNA:   3'- -GGUuUCCGauUCa-GCCUUUUGAG--CGC- -5'
29811 3' -47.6 NC_006273.1 + 151592 0.68 0.999778
Target:  5'- gCCGcAGGCgaaAGGUgCGGAAAuACUCGUu -3'
miRNA:   3'- -GGUuUCCGa--UUCA-GCCUUU-UGAGCGc -5'
29811 3' -47.6 NC_006273.1 + 114193 0.68 0.999646
Target:  5'- uUCGAAGGCUAcucuauGUCGGccga-UCGCGc -3'
miRNA:   3'- -GGUUUCCGAUu-----CAGCCuuuugAGCGC- -5'
29811 3' -47.6 NC_006273.1 + 107337 0.71 0.997469
Target:  5'- aCCAAAGGCUauuGAGggUGGAuAGAUUUGCa -3'
miRNA:   3'- -GGUUUCCGA---UUCa-GCCU-UUUGAGCGc -5'
29811 3' -47.6 NC_006273.1 + 104850 0.73 0.981961
Target:  5'- cUCAAGGGCUAucucUCGGAGGGCUguuugccucacaCGCGg -3'
miRNA:   3'- -GGUUUCCGAUuc--AGCCUUUUGA------------GCGC- -5'
29811 3' -47.6 NC_006273.1 + 94673 0.72 0.992551
Target:  5'- cCCAcggGGGGCUGGGUCGcGGAccccgguuccuaGGCUCGUu -3'
miRNA:   3'- -GGU---UUCCGAUUCAGC-CUU------------UUGAGCGc -5'
29811 3' -47.6 NC_006273.1 + 47808 0.72 0.994325
Target:  5'- gCCucuGGGCcagGAGUCGGAacccgagaucacaGAACaUCGCGa -3'
miRNA:   3'- -GGuu-UCCGa--UUCAGCCU-------------UUUG-AGCGC- -5'
29811 3' -47.6 NC_006273.1 + 43075 0.71 0.995185
Target:  5'- aCC-GAGGaaAGGUCGGGGuuguggaaacgcAGCUCGCGg -3'
miRNA:   3'- -GGuUUCCgaUUCAGCCUU------------UUGAGCGC- -5'
29811 3' -47.6 NC_006273.1 + 87265 0.71 0.995185
Target:  5'- gCCAGAGaCaugGAGUCGGugcacaaauAACUCGCGg -3'
miRNA:   3'- -GGUUUCcGa--UUCAGCCuu-------UUGAGCGC- -5'
29811 3' -47.6 NC_006273.1 + 101492 0.71 0.996477
Target:  5'- gUCGAcGGCgAGGUUGGAcuucGCUCGCGu -3'
miRNA:   3'- -GGUUuCCGaUUCAGCCUuu--UGAGCGC- -5'
29811 3' -47.6 NC_006273.1 + 126538 0.71 0.996477
Target:  5'- gCGAAGGCUGugGGUagCGGGAAACcaccgUCGUGa -3'
miRNA:   3'- gGUUUCCGAU--UCA--GCCUUUUG-----AGCGC- -5'
29811 3' -47.6 NC_006273.1 + 61363 0.71 0.997007
Target:  5'- gUAAAGGCUAAuGUa-GAGGugUCGCGg -3'
miRNA:   3'- gGUUUCCGAUU-CAgcCUUUugAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.