miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29811 3' -47.6 NC_006273.1 + 177823 0.66 0.99999
Target:  5'- ---cGGGUUuGGUCGGgcAGCgCGCGa -3'
miRNA:   3'- gguuUCCGAuUCAGCCuuUUGaGCGC- -5'
29811 3' -47.6 NC_006273.1 + 87265 0.71 0.995185
Target:  5'- gCCAGAGaCaugGAGUCGGugcacaaauAACUCGCGg -3'
miRNA:   3'- -GGUUUCcGa--UUCAGCCuu-------UUGAGCGC- -5'
29811 3' -47.6 NC_006273.1 + 102000 0.66 0.99999
Target:  5'- gCCGuGGGGCUGAaagaGGAGGACguggggCGCGg -3'
miRNA:   3'- -GGU-UUCCGAUUcag-CCUUUUGa-----GCGC- -5'
29811 3' -47.6 NC_006273.1 + 189466 0.66 0.999974
Target:  5'- aCGAAGuCUc-GUCGGAucGCUUGCGg -3'
miRNA:   3'- gGUUUCcGAuuCAGCCUuuUGAGCGC- -5'
29811 3' -47.6 NC_006273.1 + 165891 0.66 0.999974
Target:  5'- aCGAAGGUaacUGAGUCG---AugUCGCGc -3'
miRNA:   3'- gGUUUCCG---AUUCAGCcuuUugAGCGC- -5'
29811 3' -47.6 NC_006273.1 + 71387 0.66 0.999974
Target:  5'- cCCAuGGGCUGucagcGUCGGGug---CGCGa -3'
miRNA:   3'- -GGUuUCCGAUu----CAGCCUuuugaGCGC- -5'
29811 3' -47.6 NC_006273.1 + 147119 0.67 0.999965
Target:  5'- -gGAAGGCUGugaggcuGUCGcccauguacGAAAugUCGCGu -3'
miRNA:   3'- ggUUUCCGAUu------CAGC---------CUUUugAGCGC- -5'
29811 3' -47.6 NC_006273.1 + 101492 0.71 0.996477
Target:  5'- gUCGAcGGCgAGGUUGGAcuucGCUCGCGu -3'
miRNA:   3'- -GGUUuCCGaUUCAGCCUuu--UGAGCGC- -5'
29811 3' -47.6 NC_006273.1 + 107337 0.71 0.997469
Target:  5'- aCCAAAGGCUauuGAGggUGGAuAGAUUUGCa -3'
miRNA:   3'- -GGUUUCCGA---UUCa-GCCU-UUUGAGCGc -5'
29811 3' -47.6 NC_006273.1 + 114193 0.68 0.999646
Target:  5'- uUCGAAGGCUAcucuauGUCGGccga-UCGCGc -3'
miRNA:   3'- -GGUUUCCGAUu-----CAGCCuuuugAGCGC- -5'
29811 3' -47.6 NC_006273.1 + 151592 0.68 0.999778
Target:  5'- gCCGcAGGCgaaAGGUgCGGAAAuACUCGUu -3'
miRNA:   3'- -GGUuUCCGa--UUCA-GCCUUU-UGAGCGc -5'
29811 3' -47.6 NC_006273.1 + 167942 0.68 0.999778
Target:  5'- aCAGAGGCUGAG--GGGAAACccCGUa -3'
miRNA:   3'- gGUUUCCGAUUCagCCUUUUGa-GCGc -5'
29811 3' -47.6 NC_006273.1 + 193771 0.68 0.999812
Target:  5'- gCCAGGGGCUGGGUgugcgaaaccggugUGGAAGccgaggagGCUauggCGCGg -3'
miRNA:   3'- -GGUUUCCGAUUCA--------------GCCUUU--------UGA----GCGC- -5'
29811 3' -47.6 NC_006273.1 + 65192 0.68 0.999825
Target:  5'- aCCAGAGGCUGAGaUCGccg----CGCGu -3'
miRNA:   3'- -GGUUUCCGAUUC-AGCcuuuugaGCGC- -5'
29811 3' -47.6 NC_006273.1 + 221024 0.67 0.999895
Target:  5'- gCCAcAGGC--AGcgCGGGGAGCUCcgGCGg -3'
miRNA:   3'- -GGUuUCCGauUCa-GCCUUUUGAG--CGC- -5'
29811 3' -47.6 NC_006273.1 + 71998 0.67 0.999895
Target:  5'- uCCAAAGaGCguc-UCGGAgacGAGCUCGUa -3'
miRNA:   3'- -GGUUUC-CGauucAGCCU---UUUGAGCGc -5'
29811 3' -47.6 NC_006273.1 + 134135 0.67 0.999919
Target:  5'- gCGAuGGCUAccucAGaacucUCGGAGAGgUCGCGc -3'
miRNA:   3'- gGUUuCCGAU----UC-----AGCCUUUUgAGCGC- -5'
29811 3' -47.6 NC_006273.1 + 222270 0.67 0.999938
Target:  5'- aUCGGAGGUUuguggauAGUCGGGucGGAUcCGCGg -3'
miRNA:   3'- -GGUUUCCGAu------UCAGCCU--UUUGaGCGC- -5'
29811 3' -47.6 NC_006273.1 + 115973 0.67 0.999954
Target:  5'- gCGcuGGCUGAGaCGGGcgGCgCGCGu -3'
miRNA:   3'- gGUuuCCGAUUCaGCCUuuUGaGCGC- -5'
29811 3' -47.6 NC_006273.1 + 28019 0.67 0.999965
Target:  5'- gUAGAGGCUAug-CGGGAuGCU-GCGg -3'
miRNA:   3'- gGUUUCCGAUucaGCCUUuUGAgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.