miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29811 5' -55.1 NC_006273.1 + 171882 0.66 0.98054
Target:  5'- gCUGGugGGggUCGGCUUguuaagaggGGCg-CUGc -3'
miRNA:   3'- gGGCCugCCaaAGCCGAA---------UCGgaGAC- -5'
29811 5' -55.1 NC_006273.1 + 64035 0.66 0.978388
Target:  5'- -gCGcGGCGGUUUUGGUggcgcGGCCUCc- -3'
miRNA:   3'- ggGC-CUGCCAAAGCCGaa---UCGGAGac -5'
29811 5' -55.1 NC_006273.1 + 161821 0.66 0.978388
Target:  5'- aUCGGAgGGUc-CGcGCgucGGCCUCUGg -3'
miRNA:   3'- gGGCCUgCCAaaGC-CGaa-UCGGAGAC- -5'
29811 5' -55.1 NC_006273.1 + 110246 0.66 0.978388
Target:  5'- gCCCgugGGACGGagacUUgGGCgccGGCCUCUu -3'
miRNA:   3'- -GGG---CCUGCCa---AAgCCGaa-UCGGAGAc -5'
29811 5' -55.1 NC_006273.1 + 123863 0.66 0.976065
Target:  5'- aCCCGGACGGca-UGGCUUAcucgcguguccCCUCUu -3'
miRNA:   3'- -GGGCCUGCCaaaGCCGAAUc----------GGAGAc -5'
29811 5' -55.1 NC_006273.1 + 21560 0.66 0.976065
Target:  5'- -gCGGcGCGGcgcagCGGCUgAGCCUCUc -3'
miRNA:   3'- ggGCC-UGCCaaa--GCCGAaUCGGAGAc -5'
29811 5' -55.1 NC_006273.1 + 66771 0.66 0.976065
Target:  5'- aCCCGGGCaGccgCGGCUcggcgcugacacUGGCCUUg- -3'
miRNA:   3'- -GGGCCUGcCaaaGCCGA------------AUCGGAGac -5'
29811 5' -55.1 NC_006273.1 + 212179 0.66 0.973563
Target:  5'- aUCCGGGCGGUcUCGGauauagcgAGCC-Ca- -3'
miRNA:   3'- -GGGCCUGCCAaAGCCgaa-----UCGGaGac -5'
29811 5' -55.1 NC_006273.1 + 189091 0.66 0.973563
Target:  5'- gCCCGGGCGG---CGGaggUGGCUUCc- -3'
miRNA:   3'- -GGGCCUGCCaaaGCCga-AUCGGAGac -5'
29811 5' -55.1 NC_006273.1 + 37134 0.66 0.973563
Target:  5'- gCCgCGGA-GGUgcuggCGGCcgUGGCCUgUGg -3'
miRNA:   3'- -GG-GCCUgCCAaa---GCCGa-AUCGGAgAC- -5'
29811 5' -55.1 NC_006273.1 + 106116 0.66 0.973303
Target:  5'- gCCUGGAaugGGUUUauuuuuugaccagCGGCUUGGCCg--- -3'
miRNA:   3'- -GGGCCUg--CCAAA-------------GCCGAAUCGGagac -5'
29811 5' -55.1 NC_006273.1 + 143679 0.66 0.970878
Target:  5'- uCgCGGGCGGgugcgUCGGCU-AGCggUCUGg -3'
miRNA:   3'- -GgGCCUGCCaa---AGCCGAaUCGg-AGAC- -5'
29811 5' -55.1 NC_006273.1 + 80239 0.67 0.964931
Target:  5'- aCCUGGGCGcGgcccUCGGCaUUAGCCa--- -3'
miRNA:   3'- -GGGCCUGC-Caa--AGCCG-AAUCGGagac -5'
29811 5' -55.1 NC_006273.1 + 171406 0.67 0.960292
Target:  5'- aCCGuGCGGUgacccuuggcgugUCGGCUUAcuuCCUCUGu -3'
miRNA:   3'- gGGCcUGCCAa------------AGCCGAAUc--GGAGAC- -5'
29811 5' -55.1 NC_006273.1 + 41029 0.67 0.95818
Target:  5'- uUCUGGACGGcgUCGacuGCUcgGGCgUCUGa -3'
miRNA:   3'- -GGGCCUGCCaaAGC---CGAa-UCGgAGAC- -5'
29811 5' -55.1 NC_006273.1 + 161663 0.67 0.95818
Target:  5'- gUCUGcGACGGggUCGGCgcucuGCCggCUGc -3'
miRNA:   3'- -GGGC-CUGCCaaAGCCGaau--CGGa-GAC- -5'
29811 5' -55.1 NC_006273.1 + 117705 0.68 0.927769
Target:  5'- uCCCGGGUGGggUCGGCguuacgAGCC-Cg- -3'
miRNA:   3'- -GGGCCUGCCaaAGCCGaa----UCGGaGac -5'
29811 5' -55.1 NC_006273.1 + 231709 0.71 0.826746
Target:  5'- cCCCGGGuCGGcgUCGGCau-GCCgCUGa -3'
miRNA:   3'- -GGGCCU-GCCaaAGCCGaauCGGaGAC- -5'
29811 5' -55.1 NC_006273.1 + 141059 0.72 0.756481
Target:  5'- cCCgCGGACGGac-CGGCgccgGGCCUCg- -3'
miRNA:   3'- -GG-GCCUGCCaaaGCCGaa--UCGGAGac -5'
29811 5' -55.1 NC_006273.1 + 137266 1.11 0.004491
Target:  5'- cCCCGGACGGUUUCGGCUUAGCCUCUGg -3'
miRNA:   3'- -GGGCCUGCCAAAGCCGAAUCGGAGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.