miRNA display CGI


Results 1 - 20 of 239 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29826 3' -54.9 NC_006273.1 + 62404 0.66 0.968632
Target:  5'- --aGCGuGCGGCACAUgAGCucuUUCGUc -3'
miRNA:   3'- aaaCGC-UGCCGUGUAgUCGuc-GAGCG- -5'
29826 3' -54.9 NC_006273.1 + 122242 0.66 0.968632
Target:  5'- --gGCGacugaGCGGCGCGcccUCuGCGGC-CGCc -3'
miRNA:   3'- aaaCGC-----UGCCGUGU---AGuCGUCGaGCG- -5'
29826 3' -54.9 NC_006273.1 + 193864 0.66 0.968632
Target:  5'- --gGCGACGGCGaaugCAGCAGacggUGUu -3'
miRNA:   3'- aaaCGCUGCCGUgua-GUCGUCga--GCG- -5'
29826 3' -54.9 NC_006273.1 + 162442 0.66 0.968632
Target:  5'- --gGUGACGGCGCucuuUCAGCGuaUgGUu -3'
miRNA:   3'- aaaCGCUGCCGUGu---AGUCGUcgAgCG- -5'
29826 3' -54.9 NC_006273.1 + 127150 0.66 0.965841
Target:  5'- --cGuCGGUGGCACGguaaucguccacaaaCAGCGGCUCGUc -3'
miRNA:   3'- aaaC-GCUGCCGUGUa--------------GUCGUCGAGCG- -5'
29826 3' -54.9 NC_006273.1 + 218944 0.66 0.965521
Target:  5'- --cGCGuCGGUgucaugaccgugACG-CAGCAGCaUCGCu -3'
miRNA:   3'- aaaCGCuGCCG------------UGUaGUCGUCG-AGCG- -5'
29826 3' -54.9 NC_006273.1 + 65081 0.66 0.965521
Target:  5'- -cUGCGAgGGUcucCAUCAGguGCUgauggUGCu -3'
miRNA:   3'- aaACGCUgCCGu--GUAGUCguCGA-----GCG- -5'
29826 3' -54.9 NC_006273.1 + 173642 0.66 0.965521
Target:  5'- ---aCGAaGGCGCGaCGGC-GCUCGCg -3'
miRNA:   3'- aaacGCUgCCGUGUaGUCGuCGAGCG- -5'
29826 3' -54.9 NC_006273.1 + 201030 0.66 0.965521
Target:  5'- cUUUGgGACGcGCACccauuacuugCGGCAGCUaUGCu -3'
miRNA:   3'- -AAACgCUGC-CGUGua--------GUCGUCGA-GCG- -5'
29826 3' -54.9 NC_006273.1 + 175060 0.66 0.965521
Target:  5'- --gGUGGCGGCGuCGUCAGuUGGCgucccgagUCGCc -3'
miRNA:   3'- aaaCGCUGCCGU-GUAGUC-GUCG--------AGCG- -5'
29826 3' -54.9 NC_006273.1 + 82911 0.66 0.965521
Target:  5'- -gUGCGcucggaGCGGCugGagGcGCAGCUgCGCg -3'
miRNA:   3'- aaACGC------UGCCGugUagU-CGUCGA-GCG- -5'
29826 3' -54.9 NC_006273.1 + 148021 0.66 0.965521
Target:  5'- --aGCGGCGGCaACAgcuUCGGgAGCagaaccCGCg -3'
miRNA:   3'- aaaCGCUGCCG-UGU---AGUCgUCGa-----GCG- -5'
29826 3' -54.9 NC_006273.1 + 145612 0.66 0.965521
Target:  5'- --aGCGACGGuCugGgCGGCGG-UCGUg -3'
miRNA:   3'- aaaCGCUGCC-GugUaGUCGUCgAGCG- -5'
29826 3' -54.9 NC_006273.1 + 144117 0.66 0.965198
Target:  5'- --cGCGACGagggucuGCGCgacauuuuggGUCAGCGGCaCGCc -3'
miRNA:   3'- aaaCGCUGC-------CGUG----------UAGUCGUCGaGCG- -5'
29826 3' -54.9 NC_006273.1 + 192361 0.66 0.962199
Target:  5'- --cGCGGCcguGGCGCGUC-GCGGCUa-- -3'
miRNA:   3'- aaaCGCUG---CCGUGUAGuCGUCGAgcg -5'
29826 3' -54.9 NC_006273.1 + 173086 0.66 0.962199
Target:  5'- --aGCGGCGcccuugcuCACAUCAuGCAGCUCc- -3'
miRNA:   3'- aaaCGCUGCc-------GUGUAGU-CGUCGAGcg -5'
29826 3' -54.9 NC_006273.1 + 72224 0.66 0.962199
Target:  5'- --aGCGAgcGCGCAUCcagauGGC-GCUCGCa -3'
miRNA:   3'- aaaCGCUgcCGUGUAG-----UCGuCGAGCG- -5'
29826 3' -54.9 NC_006273.1 + 47290 0.66 0.962199
Target:  5'- cUUGCG-CGGCaACA-CAGCAGUcCGg -3'
miRNA:   3'- aAACGCuGCCG-UGUaGUCGUCGaGCg -5'
29826 3' -54.9 NC_006273.1 + 121097 0.66 0.962199
Target:  5'- -aUGCGAuacUGGCugGugaaggUgGGguGCUCGCu -3'
miRNA:   3'- aaACGCU---GCCGugU------AgUCguCGAGCG- -5'
29826 3' -54.9 NC_006273.1 + 177025 0.66 0.962199
Target:  5'- gUUGCcGCGGCucucCAUCGcCAGCgCGCg -3'
miRNA:   3'- aAACGcUGCCGu---GUAGUcGUCGaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.