miRNA display CGI


Results 1 - 20 of 239 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29826 3' -54.9 NC_006273.1 + 64265 0.66 0.958661
Target:  5'- gUUGCGGCGGCGgCcgaAGCGGauggCGCc -3'
miRNA:   3'- aAACGCUGCCGU-GuagUCGUCga--GCG- -5'
29826 3' -54.9 NC_006273.1 + 121097 0.66 0.962199
Target:  5'- -aUGCGAuacUGGCugGugaaggUgGGguGCUCGCu -3'
miRNA:   3'- aaACGCU---GCCGugU------AgUCguCGAGCG- -5'
29826 3' -54.9 NC_006273.1 + 63167 0.66 0.958661
Target:  5'- cUUGCGuccgucucGCGGCGCGgccggcGCGGcCUCGCc -3'
miRNA:   3'- aAACGC--------UGCCGUGUagu---CGUC-GAGCG- -5'
29826 3' -54.9 NC_006273.1 + 72812 0.66 0.958661
Target:  5'- --cGCaGACGGCGCAgcaGGUAGUcggugUCGUa -3'
miRNA:   3'- aaaCG-CUGCCGUGUag-UCGUCG-----AGCG- -5'
29826 3' -54.9 NC_006273.1 + 152001 0.66 0.954902
Target:  5'- --gGUGGCGGCGg--CAGCAGCcCGa -3'
miRNA:   3'- aaaCGCUGCCGUguaGUCGUCGaGCg -5'
29826 3' -54.9 NC_006273.1 + 31841 0.66 0.954902
Target:  5'- --cGCGuC-GUGCGUCAGCAGgaCGCc -3'
miRNA:   3'- aaaCGCuGcCGUGUAGUCGUCgaGCG- -5'
29826 3' -54.9 NC_006273.1 + 144117 0.66 0.965198
Target:  5'- --cGCGACGagggucuGCGCgacauuuuggGUCAGCGGCaCGCc -3'
miRNA:   3'- aaaCGCUGC-------CGUG----------UAGUCGUCGaGCG- -5'
29826 3' -54.9 NC_006273.1 + 192628 0.66 0.962199
Target:  5'- -aUGCGacucGCGGCGuagcucgcCGUCGcuauGCGGCUCGUc -3'
miRNA:   3'- aaACGC----UGCCGU--------GUAGU----CGUCGAGCG- -5'
29826 3' -54.9 NC_006273.1 + 162442 0.66 0.968632
Target:  5'- --gGUGACGGCGCucuuUCAGCGuaUgGUu -3'
miRNA:   3'- aaaCGCUGCCGUGu---AGUCGUcgAgCG- -5'
29826 3' -54.9 NC_006273.1 + 129562 0.66 0.954902
Target:  5'- -cUGUGAC-GCucuaauaguCGUCGGCGGCUcCGCu -3'
miRNA:   3'- aaACGCUGcCGu--------GUAGUCGUCGA-GCG- -5'
29826 3' -54.9 NC_006273.1 + 72224 0.66 0.962199
Target:  5'- --aGCGAgcGCGCAUCcagauGGC-GCUCGCa -3'
miRNA:   3'- aaaCGCUgcCGUGUAG-----UCGuCGAGCG- -5'
29826 3' -54.9 NC_006273.1 + 113749 0.66 0.958661
Target:  5'- --gGCGGCGGCGCcgugcUCAuGCAGUcaGCa -3'
miRNA:   3'- aaaCGCUGCCGUGu----AGU-CGUCGagCG- -5'
29826 3' -54.9 NC_006273.1 + 173086 0.66 0.962199
Target:  5'- --aGCGGCGcccuugcuCACAUCAuGCAGCUCc- -3'
miRNA:   3'- aaaCGCUGCc-------GUGUAGU-CGUCGAGcg -5'
29826 3' -54.9 NC_006273.1 + 112225 0.66 0.958661
Target:  5'- --cGCGGCGGUggcaaugcGCggCGGgGGCUgGCg -3'
miRNA:   3'- aaaCGCUGCCG--------UGuaGUCgUCGAgCG- -5'
29826 3' -54.9 NC_006273.1 + 208242 0.66 0.958661
Target:  5'- --aGCGACGGCAg--CGGCGGgUC-Ca -3'
miRNA:   3'- aaaCGCUGCCGUguaGUCGUCgAGcG- -5'
29826 3' -54.9 NC_006273.1 + 74388 0.66 0.958661
Target:  5'- --gGCGuCGGUgACG-C-GCAGCUCGCu -3'
miRNA:   3'- aaaCGCuGCCG-UGUaGuCGUCGAGCG- -5'
29826 3' -54.9 NC_006273.1 + 213856 0.66 0.958661
Target:  5'- --aGCGACGGUGgGUCGuCGucccguccccGCUCGCa -3'
miRNA:   3'- aaaCGCUGCCGUgUAGUcGU----------CGAGCG- -5'
29826 3' -54.9 NC_006273.1 + 47290 0.66 0.962199
Target:  5'- cUUGCG-CGGCaACA-CAGCAGUcCGg -3'
miRNA:   3'- aAACGCuGCCG-UGUaGUCGUCGaGCg -5'
29826 3' -54.9 NC_006273.1 + 65081 0.66 0.965521
Target:  5'- -cUGCGAgGGUcucCAUCAGguGCUgauggUGCu -3'
miRNA:   3'- aaACGCUgCCGu--GUAGUCguCGA-----GCG- -5'
29826 3' -54.9 NC_006273.1 + 28814 0.66 0.954902
Target:  5'- -cUGcCGACGaaACG-CAGCGGCUCGg -3'
miRNA:   3'- aaAC-GCUGCcgUGUaGUCGUCGAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.