miRNA display CGI


Results 41 - 60 of 239 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29826 3' -54.9 NC_006273.1 + 218944 0.66 0.965521
Target:  5'- --cGCGuCGGUgucaugaccgugACG-CAGCAGCaUCGCu -3'
miRNA:   3'- aaaCGCuGCCG------------UGUaGUCGUCG-AGCG- -5'
29826 3' -54.9 NC_006273.1 + 103027 0.67 0.946706
Target:  5'- --cGCcGCGGCGg--CAGCGGC-CGCg -3'
miRNA:   3'- aaaCGcUGCCGUguaGUCGUCGaGCG- -5'
29826 3' -54.9 NC_006273.1 + 35933 0.67 0.952539
Target:  5'- --cGUGGCGcGCACGU-AGCGcugcaggugaaccccGCUCGCa -3'
miRNA:   3'- aaaCGCUGC-CGUGUAgUCGU---------------CGAGCG- -5'
29826 3' -54.9 NC_006273.1 + 176589 0.67 0.937584
Target:  5'- -gUGCaGCGGCugA-CGGUgaacguGGCUCGCu -3'
miRNA:   3'- aaACGcUGCCGugUaGUCG------UCGAGCG- -5'
29826 3' -54.9 NC_006273.1 + 40675 0.67 0.950918
Target:  5'- --cGCGuCGGCGuCcUCAGCGcGUUUGCg -3'
miRNA:   3'- aaaCGCuGCCGU-GuAGUCGU-CGAGCG- -5'
29826 3' -54.9 NC_006273.1 + 167669 0.67 0.945397
Target:  5'- --aGCGGuugGGCGCGUUgaucuaggcccaagAGCAGCUCGa -3'
miRNA:   3'- aaaCGCUg--CCGUGUAG--------------UCGUCGAGCg -5'
29826 3' -54.9 NC_006273.1 + 219026 0.67 0.950918
Target:  5'- --aGCGACGGCACGUaguuguGguGCUa-- -3'
miRNA:   3'- aaaCGCUGCCGUGUAgu----CguCGAgcg -5'
29826 3' -54.9 NC_006273.1 + 34393 0.67 0.932671
Target:  5'- gUUGaCGugGGCggcgaugagaACGUCAGCGGUg-GCg -3'
miRNA:   3'- aAAC-GCugCCG----------UGUAGUCGUCGagCG- -5'
29826 3' -54.9 NC_006273.1 + 38089 0.67 0.942262
Target:  5'- --cGCG-CGGC-C-UCGGCGGCgggCGCc -3'
miRNA:   3'- aaaCGCuGCCGuGuAGUCGUCGa--GCG- -5'
29826 3' -54.9 NC_006273.1 + 160123 0.67 0.937584
Target:  5'- -aUGaGGCGGcCGCcgCGGCGGCcagCGCu -3'
miRNA:   3'- aaACgCUGCC-GUGuaGUCGUCGa--GCG- -5'
29826 3' -54.9 NC_006273.1 + 80063 0.67 0.927521
Target:  5'- --cGCGGCaGGCGCAcucgucCAGCAGCgaggUGUa -3'
miRNA:   3'- aaaCGCUG-CCGUGUa-----GUCGUCGa---GCG- -5'
29826 3' -54.9 NC_006273.1 + 188850 0.67 0.927521
Target:  5'- ---cCGACGGUGCG-CGGCAGuCUCGg -3'
miRNA:   3'- aaacGCUGCCGUGUaGUCGUC-GAGCg -5'
29826 3' -54.9 NC_006273.1 + 76523 0.67 0.932671
Target:  5'- --cGCGAauGCACGUC-GCcGCUCGg -3'
miRNA:   3'- aaaCGCUgcCGUGUAGuCGuCGAGCg -5'
29826 3' -54.9 NC_006273.1 + 196778 0.67 0.932671
Target:  5'- -gUGCGuCGGCACcugaaccagcGUCugugcuGCGGCUgGCu -3'
miRNA:   3'- aaACGCuGCCGUG----------UAGu-----CGUCGAgCG- -5'
29826 3' -54.9 NC_006273.1 + 206676 0.67 0.937584
Target:  5'- --aGCauaGCGGUGCG-CAGCAGgUCGCc -3'
miRNA:   3'- aaaCGc--UGCCGUGUaGUCGUCgAGCG- -5'
29826 3' -54.9 NC_006273.1 + 152535 0.67 0.937584
Target:  5'- -aUGCGcACGGCGCccaGGC-GCUCGg -3'
miRNA:   3'- aaACGC-UGCCGUGuagUCGuCGAGCg -5'
29826 3' -54.9 NC_006273.1 + 84856 0.67 0.950918
Target:  5'- --cGCGGCGGC-CGUCAGgguggagGGCUUGg -3'
miRNA:   3'- aaaCGCUGCCGuGUAGUCg------UCGAGCg -5'
29826 3' -54.9 NC_006273.1 + 167178 0.67 0.932671
Target:  5'- --gGCcACGGCGgGcgCAGCGGC-CGCg -3'
miRNA:   3'- aaaCGcUGCCGUgUa-GUCGUCGaGCG- -5'
29826 3' -54.9 NC_006273.1 + 737 0.67 0.950918
Target:  5'- --cGCGuCGGCGuCcUCAGCGcGUUUGCg -3'
miRNA:   3'- aaaCGCuGCCGU-GuAGUCGU-CGAGCG- -5'
29826 3' -54.9 NC_006273.1 + 189798 0.67 0.950918
Target:  5'- --cGCGGCcauGGCcgccuGCA-CGGCAGCUUGUa -3'
miRNA:   3'- aaaCGCUG---CCG-----UGUaGUCGUCGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.