miRNA display CGI


Results 1 - 20 of 239 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29826 3' -54.9 NC_006273.1 + 130764 1.1 0.004127
Target:  5'- cUUUGCGACGGCACAUCAGCAGCUCGCa -3'
miRNA:   3'- -AAACGCUGCCGUGUAGUCGUCGAGCG- -5'
29826 3' -54.9 NC_006273.1 + 62041 0.81 0.286827
Target:  5'- --aGCGGCGGCACcgCGGCGGCg-GCg -3'
miRNA:   3'- aaaCGCUGCCGUGuaGUCGUCGagCG- -5'
29826 3' -54.9 NC_006273.1 + 36924 0.8 0.321749
Target:  5'- cUUGUGACGGCG-AUCAGCAGC-CGUg -3'
miRNA:   3'- aAACGCUGCCGUgUAGUCGUCGaGCG- -5'
29826 3' -54.9 NC_006273.1 + 144425 0.79 0.359753
Target:  5'- --cGCGGCGGCggACGguucggguggCGGCGGCUCGCa -3'
miRNA:   3'- aaaCGCUGCCG--UGUa---------GUCGUCGAGCG- -5'
29826 3' -54.9 NC_006273.1 + 37299 0.77 0.435676
Target:  5'- cUUGCGACGGCcggACAUgcCGGCAGUcCGCg -3'
miRNA:   3'- aAACGCUGCCG---UGUA--GUCGUCGaGCG- -5'
29826 3' -54.9 NC_006273.1 + 197065 0.77 0.462966
Target:  5'- --gGCGGCGGCAgCggCAGCAGCggcggCGCc -3'
miRNA:   3'- aaaCGCUGCCGU-GuaGUCGUCGa----GCG- -5'
29826 3' -54.9 NC_006273.1 + 2172 0.77 0.462966
Target:  5'- --gGCGGCGGCAgCggCAGCAGCggcggCGCc -3'
miRNA:   3'- aaaCGCUGCCGU-GuaGUCGUCGa----GCG- -5'
29826 3' -54.9 NC_006273.1 + 80950 0.76 0.50069
Target:  5'- -cUGCGGCGagucgcccaGCGgGUCGGcCAGCUCGCa -3'
miRNA:   3'- aaACGCUGC---------CGUgUAGUC-GUCGAGCG- -5'
29826 3' -54.9 NC_006273.1 + 38830 0.76 0.50069
Target:  5'- --aGCGcCGGCugAggCAGCAGCgUCGCg -3'
miRNA:   3'- aaaCGCuGCCGugUa-GUCGUCG-AGCG- -5'
29826 3' -54.9 NC_006273.1 + 233722 0.76 0.50069
Target:  5'- --aGCGcCGGCugAggCAGCAGCgUCGCg -3'
miRNA:   3'- aaaCGCuGCCGugUa-GUCGUCG-AGCG- -5'
29826 3' -54.9 NC_006273.1 + 20387 0.76 0.509366
Target:  5'- -cUGCGACGGUcgcugccACAgCAGCGGCgUCGCc -3'
miRNA:   3'- aaACGCUGCCG-------UGUaGUCGUCG-AGCG- -5'
29826 3' -54.9 NC_006273.1 + 163099 0.76 0.510334
Target:  5'- --cGCGGCGGCcuCAUCGGCAGCgUCa- -3'
miRNA:   3'- aaaCGCUGCCGu-GUAGUCGUCG-AGcg -5'
29826 3' -54.9 NC_006273.1 + 220780 0.76 0.51908
Target:  5'- --aGCGuaucccaACGGC--GUCAGCGGCUCGCg -3'
miRNA:   3'- aaaCGC-------UGCCGugUAGUCGUCGAGCG- -5'
29826 3' -54.9 NC_006273.1 + 80387 0.76 0.520055
Target:  5'- --aGCGGCGGCcgugGCggCGGCAGCggCGCa -3'
miRNA:   3'- aaaCGCUGCCG----UGuaGUCGUCGa-GCG- -5'
29826 3' -54.9 NC_006273.1 + 116629 0.75 0.539707
Target:  5'- -gUGCGuaccGCGGCagACAUCAGCAGCacgUUGCg -3'
miRNA:   3'- aaACGC----UGCCG--UGUAGUCGUCG---AGCG- -5'
29826 3' -54.9 NC_006273.1 + 124468 0.75 0.549628
Target:  5'- -cUGCGcucGCGGUccagccGCAUCAGCAGCUCcugGCa -3'
miRNA:   3'- aaACGC---UGCCG------UGUAGUCGUCGAG---CG- -5'
29826 3' -54.9 NC_006273.1 + 165680 0.75 0.559605
Target:  5'- --gGCGGCGGCACAUCAagucuGCGGCaCGa -3'
miRNA:   3'- aaaCGCUGCCGUGUAGU-----CGUCGaGCg -5'
29826 3' -54.9 NC_006273.1 + 168945 0.75 0.569632
Target:  5'- aUUGUGcAC-GCGCGUCAGCAGCUgCGUg -3'
miRNA:   3'- aAACGC-UGcCGUGUAGUCGUCGA-GCG- -5'
29826 3' -54.9 NC_006273.1 + 70804 0.75 0.579702
Target:  5'- -cUGCGACGGCAgCGcCAGCGGcCUgGCc -3'
miRNA:   3'- aaACGCUGCCGU-GUaGUCGUC-GAgCG- -5'
29826 3' -54.9 NC_006273.1 + 123764 0.75 0.589809
Target:  5'- --gGCGACGGUAgAUgucCAGguGCUUGCg -3'
miRNA:   3'- aaaCGCUGCCGUgUA---GUCguCGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.