miRNA display CGI


Results 41 - 60 of 239 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29826 3' -54.9 NC_006273.1 + 151836 0.72 0.731047
Target:  5'- --cGCG-UGaGCAgGUCGcGCAGCUCGCg -3'
miRNA:   3'- aaaCGCuGC-CGUgUAGU-CGUCGAGCG- -5'
29826 3' -54.9 NC_006273.1 + 189954 0.72 0.731047
Target:  5'- --aGCucguCGGCcgGCGUgGGCGGCUCGCg -3'
miRNA:   3'- aaaCGcu--GCCG--UGUAgUCGUCGAGCG- -5'
29826 3' -54.9 NC_006273.1 + 222984 0.72 0.740785
Target:  5'- --aGCGGCGuGCGCAUCu---GCUCGCc -3'
miRNA:   3'- aaaCGCUGC-CGUGUAGucguCGAGCG- -5'
29826 3' -54.9 NC_006273.1 + 31367 0.72 0.740785
Target:  5'- -cUGCGGCGGCugGacgaagagCuGCGGCaUCGCg -3'
miRNA:   3'- aaACGCUGCCGugUa-------GuCGUCG-AGCG- -5'
29826 3' -54.9 NC_006273.1 + 162781 0.72 0.740785
Target:  5'- --gGUGGCGGCGg--CAGCGGC-CGCa -3'
miRNA:   3'- aaaCGCUGCCGUguaGUCGUCGaGCG- -5'
29826 3' -54.9 NC_006273.1 + 158238 0.72 0.740785
Target:  5'- --cGCGuCGGCcgGCGaCGGCGGUUCGCc -3'
miRNA:   3'- aaaCGCuGCCG--UGUaGUCGUCGAGCG- -5'
29826 3' -54.9 NC_006273.1 + 2223 0.72 0.750429
Target:  5'- --gGCGAUGGCGgGUcCGGCGGCgUCGg -3'
miRNA:   3'- aaaCGCUGCCGUgUA-GUCGUCG-AGCg -5'
29826 3' -54.9 NC_006273.1 + 136593 0.72 0.750429
Target:  5'- --gGCGGCGGCAgAUUcaguaaccuggAGCAGCggguagCGCg -3'
miRNA:   3'- aaaCGCUGCCGUgUAG-----------UCGUCGa-----GCG- -5'
29826 3' -54.9 NC_006273.1 + 39172 0.72 0.750429
Target:  5'- -cUGCGGCGGUGC-UCcgAGCGGCgUUGCg -3'
miRNA:   3'- aaACGCUGCCGUGuAG--UCGUCG-AGCG- -5'
29826 3' -54.9 NC_006273.1 + 112555 0.72 0.750429
Target:  5'- --cGCGGuCGcCGCGUCAGCGGC-CGCc -3'
miRNA:   3'- aaaCGCU-GCcGUGUAGUCGUCGaGCG- -5'
29826 3' -54.9 NC_006273.1 + 92597 0.72 0.750429
Target:  5'- --aGCGACGGCGgcugcuguugcuCGcCAGCGGCgCGCg -3'
miRNA:   3'- aaaCGCUGCCGU------------GUaGUCGUCGaGCG- -5'
29826 3' -54.9 NC_006273.1 + 197116 0.72 0.750429
Target:  5'- --gGCGAUGGCGgGUcCGGCGGCgUCGg -3'
miRNA:   3'- aaaCGCUGCCGUgUA-GUCGUCG-AGCg -5'
29826 3' -54.9 NC_006273.1 + 44500 0.72 0.754258
Target:  5'- --aGCGGCGGUgagacacacgcgcgcACGUCGGCGGCgauaGCc -3'
miRNA:   3'- aaaCGCUGCCG---------------UGUAGUCGUCGag--CG- -5'
29826 3' -54.9 NC_006273.1 + 33439 0.72 0.754258
Target:  5'- --cGCGAcagcccCGGCGCAgcuUgaaaacgugcaggcaCAGCAGCUCGCg -3'
miRNA:   3'- aaaCGCU------GCCGUGU---A---------------GUCGUCGAGCG- -5'
29826 3' -54.9 NC_006273.1 + 196253 0.71 0.75997
Target:  5'- --cGCGACGGaccuGCGUCAGCugucGC-CGCg -3'
miRNA:   3'- aaaCGCUGCCg---UGUAGUCGu---CGaGCG- -5'
29826 3' -54.9 NC_006273.1 + 1360 0.71 0.75997
Target:  5'- --cGCGACGGaccuGCGUCAGCugucGC-CGCg -3'
miRNA:   3'- aaaCGCUGCCg---UGUAGUCGu---CGaGCG- -5'
29826 3' -54.9 NC_006273.1 + 94971 0.71 0.75997
Target:  5'- --cGCGGCGGCucccucUCGGCGGCUC-Cg -3'
miRNA:   3'- aaaCGCUGCCGugu---AGUCGUCGAGcG- -5'
29826 3' -54.9 NC_006273.1 + 95134 0.71 0.769399
Target:  5'- --aGCGACGGCAaaggcUCAGCcgcGGC-CGCg -3'
miRNA:   3'- aaaCGCUGCCGUgu---AGUCG---UCGaGCG- -5'
29826 3' -54.9 NC_006273.1 + 124434 0.71 0.769399
Target:  5'- -cUGCGGCcGCGCGggCGugcGCGGCUCGCc -3'
miRNA:   3'- aaACGCUGcCGUGUa-GU---CGUCGAGCG- -5'
29826 3' -54.9 NC_006273.1 + 196679 0.71 0.769399
Target:  5'- --gGCGugGcGCACG-CAGCGGCcguaguugUCGCg -3'
miRNA:   3'- aaaCGCugC-CGUGUaGUCGUCG--------AGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.