miRNA display CGI


Results 1 - 20 of 239 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29826 3' -54.9 NC_006273.1 + 144 0.7 0.84777
Target:  5'- -gUGCGGCGcGCACGgcgaaaAGCAGacgCGCg -3'
miRNA:   3'- aaACGCUGC-CGUGUag----UCGUCga-GCG- -5'
29826 3' -54.9 NC_006273.1 + 737 0.67 0.950918
Target:  5'- --cGCGuCGGCGuCcUCAGCGcGUUUGCg -3'
miRNA:   3'- aaaCGCuGCCGU-GuAGUCGU-CGAGCG- -5'
29826 3' -54.9 NC_006273.1 + 1298 0.74 0.610109
Target:  5'- ----aGACGGCACG-CAcacGCAGCUCGCc -3'
miRNA:   3'- aaacgCUGCCGUGUaGU---CGUCGAGCG- -5'
29826 3' -54.9 NC_006273.1 + 1360 0.71 0.75997
Target:  5'- --cGCGACGGaccuGCGUCAGCugucGC-CGCg -3'
miRNA:   3'- aaaCGCUGCCg---UGUAGUCGu---CGaGCG- -5'
29826 3' -54.9 NC_006273.1 + 1717 0.72 0.711325
Target:  5'- --gGCGACGGCGCucggaCGGgAGCUgCGCc -3'
miRNA:   3'- aaaCGCUGCCGUGua---GUCgUCGA-GCG- -5'
29826 3' -54.9 NC_006273.1 + 1886 0.67 0.932671
Target:  5'- -gUGCGuCGGCACcugaaccagcGUCugugcuGCGGCUgGCu -3'
miRNA:   3'- aaACGCuGCCGUG----------UAGu-----CGUCGAgCG- -5'
29826 3' -54.9 NC_006273.1 + 2172 0.77 0.462966
Target:  5'- --gGCGGCGGCAgCggCAGCAGCggcggCGCc -3'
miRNA:   3'- aaaCGCUGCCGU-GuaGUCGUCGa----GCG- -5'
29826 3' -54.9 NC_006273.1 + 2223 0.72 0.750429
Target:  5'- --gGCGAUGGCGgGUcCGGCGGCgUCGg -3'
miRNA:   3'- aaaCGCUGCCGUgUA-GUCGUCG-AGCg -5'
29826 3' -54.9 NC_006273.1 + 4208 0.68 0.897588
Target:  5'- --cGCGACaGGCGCGUCgagggGGCAGgaacaccCUUGCg -3'
miRNA:   3'- aaaCGCUG-CCGUGUAG-----UCGUC-------GAGCG- -5'
29826 3' -54.9 NC_006273.1 + 4583 0.68 0.916511
Target:  5'- --gGCGACGGCAg--CGGUGGUggCGCu -3'
miRNA:   3'- aaaCGCUGCCGUguaGUCGUCGa-GCG- -5'
29826 3' -54.9 NC_006273.1 + 7697 0.71 0.805813
Target:  5'- --gGCGGCGGCGg--CAGUGGC-CGCg -3'
miRNA:   3'- aaaCGCUGCCGUguaGUCGUCGaGCG- -5'
29826 3' -54.9 NC_006273.1 + 15131 0.7 0.831518
Target:  5'- --cGUGACGGgACGUCcGCGGCcgggaCGCa -3'
miRNA:   3'- aaaCGCUGCCgUGUAGuCGUCGa----GCG- -5'
29826 3' -54.9 NC_006273.1 + 18606 0.69 0.891679
Target:  5'- -cUGCGAgUGGUACGUCGuCGGcCUCGUg -3'
miRNA:   3'- aaACGCU-GCCGUGUAGUcGUC-GAGCG- -5'
29826 3' -54.9 NC_006273.1 + 18877 0.69 0.884898
Target:  5'- -cUGCGcuggcACGGCGCAcUgGGCAccaucacacGCUCGCa -3'
miRNA:   3'- aaACGC-----UGCCGUGU-AgUCGU---------CGAGCG- -5'
29826 3' -54.9 NC_006273.1 + 20230 0.69 0.884898
Target:  5'- --gGCGACGGCACGaaAGaCGGCgcuauaaCGCu -3'
miRNA:   3'- aaaCGCUGCCGUGUagUC-GUCGa------GCG- -5'
29826 3' -54.9 NC_006273.1 + 20387 0.76 0.509366
Target:  5'- -cUGCGACGGUcgcugccACAgCAGCGGCgUCGCc -3'
miRNA:   3'- aaACGCUGCCG-------UGUaGUCGUCG-AGCG- -5'
29826 3' -54.9 NC_006273.1 + 21555 0.73 0.661009
Target:  5'- --gGaCGGCGGCGCGgcgCAGCGGCUgaGCc -3'
miRNA:   3'- aaaC-GCUGCCGUGUa--GUCGUCGAg-CG- -5'
29826 3' -54.9 NC_006273.1 + 21783 0.69 0.863246
Target:  5'- gUUGCGAuccUGGCGCGUCucuccGGCGGCUgugGCu -3'
miRNA:   3'- aAACGCU---GCCGUGUAG-----UCGUCGAg--CG- -5'
29826 3' -54.9 NC_006273.1 + 22151 0.68 0.916511
Target:  5'- --gGCGGCGGC-CGUCucugaggaagAGCAGCa-GCg -3'
miRNA:   3'- aaaCGCUGCCGuGUAG----------UCGUCGagCG- -5'
29826 3' -54.9 NC_006273.1 + 22295 0.68 0.898233
Target:  5'- -cUGCGgcaGCGGUACccgacgCGGCAGCggCGCc -3'
miRNA:   3'- aaACGC---UGCCGUGua----GUCGUCGa-GCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.