miRNA display CGI


Results 21 - 40 of 239 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29826 3' -54.9 NC_006273.1 + 22593 0.66 0.954902
Target:  5'- uUUUGCGGagaaaGGCGCGUCAuCGGUcugUCGUu -3'
miRNA:   3'- -AAACGCUg----CCGUGUAGUcGUCG---AGCG- -5'
29826 3' -54.9 NC_006273.1 + 23356 0.7 0.84777
Target:  5'- --aGCGACuGU--GUCAGCGGCUgCGCa -3'
miRNA:   3'- aaaCGCUGcCGugUAGUCGUCGA-GCG- -5'
29826 3' -54.9 NC_006273.1 + 26854 0.68 0.922135
Target:  5'- --cGUGA-GcCACAUCAuccGCAGCUCGCu -3'
miRNA:   3'- aaaCGCUgCcGUGUAGU---CGUCGAGCG- -5'
29826 3' -54.9 NC_006273.1 + 27756 0.68 0.921583
Target:  5'- --cGCGAcgaacugcCGGCugcucagACGUUAcGCGGCUCGCu -3'
miRNA:   3'- aaaCGCU--------GCCG-------UGUAGU-CGUCGAGCG- -5'
29826 3' -54.9 NC_006273.1 + 28814 0.66 0.954902
Target:  5'- -cUGcCGACGaaACG-CAGCGGCUCGg -3'
miRNA:   3'- aaAC-GCUGCcgUGUaGUCGUCGAGCg -5'
29826 3' -54.9 NC_006273.1 + 30801 0.71 0.796922
Target:  5'- --aGCGGCGGUAg--CAGCAG-UCGCa -3'
miRNA:   3'- aaaCGCUGCCGUguaGUCGUCgAGCG- -5'
29826 3' -54.9 NC_006273.1 + 31367 0.72 0.740785
Target:  5'- -cUGCGGCGGCugGacgaagagCuGCGGCaUCGCg -3'
miRNA:   3'- aaACGCUGCCGugUa-------GuCGUCG-AGCG- -5'
29826 3' -54.9 NC_006273.1 + 31599 0.67 0.950918
Target:  5'- -aUGUGGCuccgccGGCACGUCAGU--UUCGCu -3'
miRNA:   3'- aaACGCUG------CCGUGUAGUCGucGAGCG- -5'
29826 3' -54.9 NC_006273.1 + 31841 0.66 0.954902
Target:  5'- --cGCGuC-GUGCGUCAGCAGgaCGCc -3'
miRNA:   3'- aaaCGCuGcCGUGUAGUCGUCgaGCG- -5'
29826 3' -54.9 NC_006273.1 + 32765 0.74 0.610109
Target:  5'- -cUGCGGCaGCGaGUCGGCGGCgCGCa -3'
miRNA:   3'- aaACGCUGcCGUgUAGUCGUCGaGCG- -5'
29826 3' -54.9 NC_006273.1 + 33284 0.69 0.877896
Target:  5'- cUUGCGGCGGCAgcgGUUGGCgugguugcucAGCUCGg -3'
miRNA:   3'- aAACGCUGCCGUg--UAGUCG----------UCGAGCg -5'
29826 3' -54.9 NC_006273.1 + 33357 0.67 0.946706
Target:  5'- -gUGCGauccuGCGGCGCGUCcccgugucGCAGCgagUGCc -3'
miRNA:   3'- aaACGC-----UGCCGUGUAGu-------CGUCGa--GCG- -5'
29826 3' -54.9 NC_006273.1 + 33439 0.72 0.754258
Target:  5'- --cGCGAcagcccCGGCGCAgcuUgaaaacgugcaggcaCAGCAGCUCGCg -3'
miRNA:   3'- aaaCGCU------GCCGUGU---A---------------GUCGUCGAGCG- -5'
29826 3' -54.9 NC_006273.1 + 34393 0.67 0.932671
Target:  5'- gUUGaCGugGGCggcgaugagaACGUCAGCGGUg-GCg -3'
miRNA:   3'- aAAC-GCugCCG----------UGUAGUCGUCGagCG- -5'
29826 3' -54.9 NC_006273.1 + 35013 0.68 0.921583
Target:  5'- --aGCGACGGCGguaaagcCAgaCAGCGGCUauauaGCu -3'
miRNA:   3'- aaaCGCUGCCGU-------GUa-GUCGUCGAg----CG- -5'
29826 3' -54.9 NC_006273.1 + 35933 0.67 0.952539
Target:  5'- --cGUGGCGcGCACGU-AGCGcugcaggugaaccccGCUCGCa -3'
miRNA:   3'- aaaCGCUGC-CGUGUAgUCGU---------------CGAGCG- -5'
29826 3' -54.9 NC_006273.1 + 36450 0.68 0.915936
Target:  5'- --gGCGGCaGGgGCAugcggccUUAGCGGCUCGg -3'
miRNA:   3'- aaaCGCUG-CCgUGU-------AGUCGUCGAGCg -5'
29826 3' -54.9 NC_006273.1 + 36658 0.7 0.82312
Target:  5'- --aGCGGCGGUguccucGCAggcCAGCAaCUCGCg -3'
miRNA:   3'- aaaCGCUGCCG------UGUa--GUCGUcGAGCG- -5'
29826 3' -54.9 NC_006273.1 + 36738 0.7 0.84777
Target:  5'- --aGCGGCGGCACAgcUCGGCccgauGgUCGg -3'
miRNA:   3'- aaaCGCUGCCGUGU--AGUCGu----CgAGCg -5'
29826 3' -54.9 NC_006273.1 + 36793 0.66 0.954902
Target:  5'- --aGUGGCGGCAg--CAGguGCaCGCu -3'
miRNA:   3'- aaaCGCUGCCGUguaGUCguCGaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.