miRNA display CGI


Results 1 - 20 of 239 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29826 3' -54.9 NC_006273.1 + 234975 0.7 0.84777
Target:  5'- -gUGCGGCGcGCACGgcgaaaAGCAGacgCGCg -3'
miRNA:   3'- aaACGCUGC-CGUGUag----UCGUCga-GCG- -5'
29826 3' -54.9 NC_006273.1 + 233722 0.76 0.50069
Target:  5'- --aGCGcCGGCugAggCAGCAGCgUCGCg -3'
miRNA:   3'- aaaCGCuGCCGugUa-GUCGUCG-AGCG- -5'
29826 3' -54.9 NC_006273.1 + 233359 0.68 0.916511
Target:  5'- --cGCGcACGGCGCGUCcccgccGGCGGCcucCGUc -3'
miRNA:   3'- aaaCGC-UGCCGUGUAG------UCGUCGa--GCG- -5'
29826 3' -54.9 NC_006273.1 + 232982 0.67 0.942262
Target:  5'- --cGCG-CGGC-C-UCGGCGGCgggCGCc -3'
miRNA:   3'- aaaCGCuGCCGuGuAGUCGUCGa--GCG- -5'
29826 3' -54.9 NC_006273.1 + 232903 0.67 0.937584
Target:  5'- --cGCGGCGcGCGgGUgCAGguGCagCGCg -3'
miRNA:   3'- aaaCGCUGC-CGUgUA-GUCguCGa-GCG- -5'
29826 3' -54.9 NC_006273.1 + 222984 0.72 0.740785
Target:  5'- --aGCGGCGuGCGCAUCu---GCUCGCc -3'
miRNA:   3'- aaaCGCUGC-CGUGUAGucguCGAGCG- -5'
29826 3' -54.9 NC_006273.1 + 220780 0.76 0.51908
Target:  5'- --aGCGuaucccaACGGC--GUCAGCGGCUCGCg -3'
miRNA:   3'- aaaCGC-------UGCCGugUAGUCGUCGAGCG- -5'
29826 3' -54.9 NC_006273.1 + 219710 0.73 0.691337
Target:  5'- ---aCGGCGGCAaa-CAGCAGCaUCGCa -3'
miRNA:   3'- aaacGCUGCCGUguaGUCGUCG-AGCG- -5'
29826 3' -54.9 NC_006273.1 + 219026 0.67 0.950918
Target:  5'- --aGCGACGGCACGUaguuguGguGCUa-- -3'
miRNA:   3'- aaaCGCUGCCGUGUAgu----CguCGAgcg -5'
29826 3' -54.9 NC_006273.1 + 218944 0.66 0.965521
Target:  5'- --cGCGuCGGUgucaugaccgugACG-CAGCAGCaUCGCu -3'
miRNA:   3'- aaaCGCuGCCG------------UGUaGUCGUCG-AGCG- -5'
29826 3' -54.9 NC_006273.1 + 216227 0.7 0.839737
Target:  5'- --aGCG-CGGCACAUgGGCGGCg--- -3'
miRNA:   3'- aaaCGCuGCCGUGUAgUCGUCGagcg -5'
29826 3' -54.9 NC_006273.1 + 215400 0.69 0.877896
Target:  5'- --cGCGACGGCAguUCGGguGauacggCGUg -3'
miRNA:   3'- aaaCGCUGCCGUguAGUCguCga----GCG- -5'
29826 3' -54.9 NC_006273.1 + 213856 0.66 0.958661
Target:  5'- --aGCGACGGUGgGUCGuCGucccguccccGCUCGCa -3'
miRNA:   3'- aaaCGCUGCCGUgUAGUcGU----------CGAGCG- -5'
29826 3' -54.9 NC_006273.1 + 213700 0.73 0.681265
Target:  5'- --gGCGACGGCuggcACAUCAGCaaggucagaaaGGCUagCGCg -3'
miRNA:   3'- aaaCGCUGCCG----UGUAGUCG-----------UCGA--GCG- -5'
29826 3' -54.9 NC_006273.1 + 209733 0.68 0.898233
Target:  5'- ---aCGGCGGCACGUgaAGCAGCgUGUa -3'
miRNA:   3'- aaacGCUGCCGUGUAg-UCGUCGaGCG- -5'
29826 3' -54.9 NC_006273.1 + 209026 0.71 0.769399
Target:  5'- --cGCGugGGCAUAUCAGaAGC-CGg -3'
miRNA:   3'- aaaCGCugCCGUGUAGUCgUCGaGCg -5'
29826 3' -54.9 NC_006273.1 + 208242 0.66 0.958661
Target:  5'- --aGCGACGGCAg--CGGCGGgUC-Ca -3'
miRNA:   3'- aaaCGCUGCCGUguaGUCGUCgAGcG- -5'
29826 3' -54.9 NC_006273.1 + 206676 0.67 0.937584
Target:  5'- --aGCauaGCGGUGCG-CAGCAGgUCGCc -3'
miRNA:   3'- aaaCGc--UGCCGUGUaGUCGUCgAGCG- -5'
29826 3' -54.9 NC_006273.1 + 204654 0.71 0.796922
Target:  5'- --aGCGAgGGCACAcuaGGCGG-UCGCg -3'
miRNA:   3'- aaaCGCUgCCGUGUag-UCGUCgAGCG- -5'
29826 3' -54.9 NC_006273.1 + 202566 0.69 0.870677
Target:  5'- --cGUGGCGGC-CGaCGGCAGCgUGCu -3'
miRNA:   3'- aaaCGCUGCCGuGUaGUCGUCGaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.