miRNA display CGI


Results 1 - 20 of 239 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29826 3' -54.9 NC_006273.1 + 167656 0.72 0.731047
Target:  5'- --aGCGGCGGCGCAaCGGCggggucGGC-CGCc -3'
miRNA:   3'- aaaCGCUGCCGUGUaGUCG------UCGaGCG- -5'
29826 3' -54.9 NC_006273.1 + 115917 0.74 0.620287
Target:  5'- -gUGUGGCGcugcacaaaGCGCGUCAGCAGUcCGCc -3'
miRNA:   3'- aaACGCUGC---------CGUGUAGUCGUCGaGCG- -5'
29826 3' -54.9 NC_006273.1 + 60914 0.74 0.640661
Target:  5'- -aUGCGACGGUugAcaaagcuaCAGC-GCUCGCg -3'
miRNA:   3'- aaACGCUGCCGugUa-------GUCGuCGAGCG- -5'
29826 3' -54.9 NC_006273.1 + 21555 0.73 0.661009
Target:  5'- --gGaCGGCGGCGCGgcgCAGCGGCUgaGCc -3'
miRNA:   3'- aaaC-GCUGCCGUGUa--GUCGUCGAg-CG- -5'
29826 3' -54.9 NC_006273.1 + 86702 0.73 0.661009
Target:  5'- --gGCGACGGaggaGCucCAGCAGCUgCGCg -3'
miRNA:   3'- aaaCGCUGCCg---UGuaGUCGUCGA-GCG- -5'
29826 3' -54.9 NC_006273.1 + 115391 0.73 0.661009
Target:  5'- --gGUGACGGCAuUAUgAGCGGCggCGCu -3'
miRNA:   3'- aaaCGCUGCCGU-GUAgUCGUCGa-GCG- -5'
29826 3' -54.9 NC_006273.1 + 213700 0.73 0.681265
Target:  5'- --gGCGACGGCuggcACAUCAGCaaggucagaaaGGCUagCGCg -3'
miRNA:   3'- aaaCGCUGCCG----UGUAGUCG-----------UCGA--GCG- -5'
29826 3' -54.9 NC_006273.1 + 196609 0.72 0.711325
Target:  5'- --gGCGACGGCGCucggaCGGgAGCUgCGCc -3'
miRNA:   3'- aaaCGCUGCCGUGua---GUCgUCGA-GCG- -5'
29826 3' -54.9 NC_006273.1 + 151836 0.72 0.731047
Target:  5'- --cGCG-UGaGCAgGUCGcGCAGCUCGCg -3'
miRNA:   3'- aaaCGCuGC-CGUgUAGU-CGUCGAGCG- -5'
29826 3' -54.9 NC_006273.1 + 32765 0.74 0.610109
Target:  5'- -cUGCGGCaGCGaGUCGGCGGCgCGCa -3'
miRNA:   3'- aaACGCUGcCGUgUAGUCGUCGaGCG- -5'
29826 3' -54.9 NC_006273.1 + 51624 0.74 0.610109
Target:  5'- --gGCGACGGCAgGcUCGGCGGCgCGg -3'
miRNA:   3'- aaaCGCUGCCGUgU-AGUCGUCGaGCg -5'
29826 3' -54.9 NC_006273.1 + 163077 0.74 0.610109
Target:  5'- --gGCGGCGGCgACggCGGCGGCU-GCg -3'
miRNA:   3'- aaaCGCUGCCG-UGuaGUCGUCGAgCG- -5'
29826 3' -54.9 NC_006273.1 + 144425 0.79 0.359753
Target:  5'- --cGCGGCGGCggACGguucggguggCGGCGGCUCGCa -3'
miRNA:   3'- aaaCGCUGCCG--UGUa---------GUCGUCGAGCG- -5'
29826 3' -54.9 NC_006273.1 + 37299 0.77 0.435676
Target:  5'- cUUGCGACGGCcggACAUgcCGGCAGUcCGCg -3'
miRNA:   3'- aAACGCUGCCG---UGUA--GUCGUCGaGCG- -5'
29826 3' -54.9 NC_006273.1 + 197065 0.77 0.462966
Target:  5'- --gGCGGCGGCAgCggCAGCAGCggcggCGCc -3'
miRNA:   3'- aaaCGCUGCCGU-GuaGUCGUCGa----GCG- -5'
29826 3' -54.9 NC_006273.1 + 233722 0.76 0.50069
Target:  5'- --aGCGcCGGCugAggCAGCAGCgUCGCg -3'
miRNA:   3'- aaaCGCuGCCGugUa-GUCGUCG-AGCG- -5'
29826 3' -54.9 NC_006273.1 + 220780 0.76 0.51908
Target:  5'- --aGCGuaucccaACGGC--GUCAGCGGCUCGCg -3'
miRNA:   3'- aaaCGC-------UGCCGugUAGUCGUCGAGCG- -5'
29826 3' -54.9 NC_006273.1 + 124468 0.75 0.549628
Target:  5'- -cUGCGcucGCGGUccagccGCAUCAGCAGCUCcugGCa -3'
miRNA:   3'- aaACGC---UGCCG------UGUAGUCGUCGAG---CG- -5'
29826 3' -54.9 NC_006273.1 + 165680 0.75 0.559605
Target:  5'- --gGCGGCGGCACAUCAagucuGCGGCaCGa -3'
miRNA:   3'- aaaCGCUGCCGUGUAGU-----CGUCGaGCg -5'
29826 3' -54.9 NC_006273.1 + 1298 0.74 0.610109
Target:  5'- ----aGACGGCACG-CAcacGCAGCUCGCc -3'
miRNA:   3'- aaacgCUGCCGUGUaGU---CGUCGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.