Results 41 - 60 of 239 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29826 | 3' | -54.9 | NC_006273.1 | + | 220780 | 0.76 | 0.51908 |
Target: 5'- --aGCGuaucccaACGGC--GUCAGCGGCUCGCg -3' miRNA: 3'- aaaCGC-------UGCCGugUAGUCGUCGAGCG- -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 233722 | 0.76 | 0.50069 |
Target: 5'- --aGCGcCGGCugAggCAGCAGCgUCGCg -3' miRNA: 3'- aaaCGCuGCCGugUa-GUCGUCG-AGCG- -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 197065 | 0.77 | 0.462966 |
Target: 5'- --gGCGGCGGCAgCggCAGCAGCggcggCGCc -3' miRNA: 3'- aaaCGCUGCCGU-GuaGUCGUCGa----GCG- -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 37299 | 0.77 | 0.435676 |
Target: 5'- cUUGCGACGGCcggACAUgcCGGCAGUcCGCg -3' miRNA: 3'- aAACGCUGCCG---UGUA--GUCGUCGaGCG- -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 144425 | 0.79 | 0.359753 |
Target: 5'- --cGCGGCGGCggACGguucggguggCGGCGGCUCGCa -3' miRNA: 3'- aaaCGCUGCCG--UGUa---------GUCGUCGAGCG- -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 21555 | 0.73 | 0.661009 |
Target: 5'- --gGaCGGCGGCGCGgcgCAGCGGCUgaGCc -3' miRNA: 3'- aaaC-GCUGCCGUGUa--GUCGUCGAg-CG- -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 86702 | 0.73 | 0.661009 |
Target: 5'- --gGCGACGGaggaGCucCAGCAGCUgCGCg -3' miRNA: 3'- aaaCGCUGCCg---UGuaGUCGUCGA-GCG- -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 33439 | 0.72 | 0.754258 |
Target: 5'- --cGCGAcagcccCGGCGCAgcuUgaaaacgugcaggcaCAGCAGCUCGCg -3' miRNA: 3'- aaaCGCU------GCCGUGU---A---------------GUCGUCGAGCG- -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 197116 | 0.72 | 0.750429 |
Target: 5'- --gGCGAUGGCGgGUcCGGCGGCgUCGg -3' miRNA: 3'- aaaCGCUGCCGUgUA-GUCGUCG-AGCg -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 112555 | 0.72 | 0.750429 |
Target: 5'- --cGCGGuCGcCGCGUCAGCGGC-CGCc -3' miRNA: 3'- aaaCGCU-GCcGUGUAGUCGUCGaGCG- -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 39172 | 0.72 | 0.750429 |
Target: 5'- -cUGCGGCGGUGC-UCcgAGCGGCgUUGCg -3' miRNA: 3'- aaACGCUGCCGUGuAG--UCGUCG-AGCG- -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 136593 | 0.72 | 0.750429 |
Target: 5'- --gGCGGCGGCAgAUUcaguaaccuggAGCAGCggguagCGCg -3' miRNA: 3'- aaaCGCUGCCGUgUAG-----------UCGUCGa-----GCG- -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 31367 | 0.72 | 0.740785 |
Target: 5'- -cUGCGGCGGCugGacgaagagCuGCGGCaUCGCg -3' miRNA: 3'- aaACGCUGCCGugUa-------GuCGUCG-AGCG- -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 222984 | 0.72 | 0.740785 |
Target: 5'- --aGCGGCGuGCGCAUCu---GCUCGCc -3' miRNA: 3'- aaaCGCUGC-CGUGUAGucguCGAGCG- -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 162781 | 0.72 | 0.740785 |
Target: 5'- --gGUGGCGGCGg--CAGCGGC-CGCa -3' miRNA: 3'- aaaCGCUGCCGUguaGUCGUCGaGCG- -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 167656 | 0.72 | 0.731047 |
Target: 5'- --aGCGGCGGCGCAaCGGCggggucGGC-CGCc -3' miRNA: 3'- aaaCGCUGCCGUGUaGUCG------UCGaGCG- -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 151836 | 0.72 | 0.731047 |
Target: 5'- --cGCG-UGaGCAgGUCGcGCAGCUCGCg -3' miRNA: 3'- aaaCGCuGC-CGUgUAGU-CGUCGAGCG- -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 196609 | 0.72 | 0.711325 |
Target: 5'- --gGCGACGGCGCucggaCGGgAGCUgCGCc -3' miRNA: 3'- aaaCGCUGCCGUGua---GUCgUCGA-GCG- -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 213700 | 0.73 | 0.681265 |
Target: 5'- --gGCGACGGCuggcACAUCAGCaaggucagaaaGGCUagCGCg -3' miRNA: 3'- aaaCGCUGCCG----UGUAGUCG-----------UCGA--GCG- -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 115391 | 0.73 | 0.661009 |
Target: 5'- --gGUGACGGCAuUAUgAGCGGCggCGCu -3' miRNA: 3'- aaaCGCUGCCGU-GUAgUCGUCGa-GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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