Results 1 - 20 of 239 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29826 | 3' | -54.9 | NC_006273.1 | + | 130764 | 1.1 | 0.004127 |
Target: 5'- cUUUGCGACGGCACAUCAGCAGCUCGCa -3' miRNA: 3'- -AAACGCUGCCGUGUAGUCGUCGAGCG- -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 219710 | 0.73 | 0.691337 |
Target: 5'- ---aCGGCGGCAaa-CAGCAGCaUCGCa -3' miRNA: 3'- aaacGCUGCCGUguaGUCGUCG-AGCG- -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 111216 | 0.72 | 0.711325 |
Target: 5'- --gGCGGCGGCggugGCGUUGGCAGCaauaGCa -3' miRNA: 3'- aaaCGCUGCCG----UGUAGUCGUCGag--CG- -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 162442 | 0.66 | 0.968632 |
Target: 5'- --gGUGACGGCGCucuuUCAGCGuaUgGUu -3' miRNA: 3'- aaaCGCUGCCGUGu---AGUCGUcgAgCG- -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 80950 | 0.76 | 0.50069 |
Target: 5'- -cUGCGGCGagucgcccaGCGgGUCGGcCAGCUCGCa -3' miRNA: 3'- aaACGCUGC---------CGUgUAGUC-GUCGAGCG- -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 20387 | 0.76 | 0.509366 |
Target: 5'- -cUGCGACGGUcgcugccACAgCAGCGGCgUCGCc -3' miRNA: 3'- aaACGCUGCCG-------UGUaGUCGUCG-AGCG- -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 80387 | 0.76 | 0.520055 |
Target: 5'- --aGCGGCGGCcgugGCggCGGCAGCggCGCa -3' miRNA: 3'- aaaCGCUGCCG----UGuaGUCGUCGa-GCG- -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 116629 | 0.75 | 0.539707 |
Target: 5'- -gUGCGuaccGCGGCagACAUCAGCAGCacgUUGCg -3' miRNA: 3'- aaACGC----UGCCG--UGUAGUCGUCG---AGCG- -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 123764 | 0.75 | 0.589809 |
Target: 5'- --gGCGACGGUAgAUgucCAGguGCUUGCg -3' miRNA: 3'- aaaCGCUGCCGUgUA---GUCguCGAGCG- -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 197013 | 0.73 | 0.681265 |
Target: 5'- --gGCGGCGGUAa--CAGCAGCUcCGUg -3' miRNA: 3'- aaaCGCUGCCGUguaGUCGUCGA-GCG- -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 38629 | 0.74 | 0.630473 |
Target: 5'- --cGC-ACGGC-CGUCAGCAGCgaCGCg -3' miRNA: 3'- aaaCGcUGCCGuGUAGUCGUCGa-GCG- -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 70804 | 0.75 | 0.579702 |
Target: 5'- -cUGCGACGGCAgCGcCAGCGGcCUgGCc -3' miRNA: 3'- aaACGCUGCCGU-GUaGUCGUC-GAgCG- -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 36924 | 0.8 | 0.321749 |
Target: 5'- cUUGUGACGGCG-AUCAGCAGC-CGUg -3' miRNA: 3'- aAACGCUGCCGUgUAGUCGUCGaGCG- -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 84635 | 0.74 | 0.640661 |
Target: 5'- ---cCGGCGGCugAUCuGCAGCgCGCu -3' miRNA: 3'- aaacGCUGCCGugUAGuCGUCGaGCG- -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 2172 | 0.77 | 0.462966 |
Target: 5'- --gGCGGCGGCAgCggCAGCAGCggcggCGCc -3' miRNA: 3'- aaaCGCUGCCGU-GuaGUCGUCGa----GCG- -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 168945 | 0.75 | 0.569632 |
Target: 5'- aUUGUGcAC-GCGCGUCAGCAGCUgCGUg -3' miRNA: 3'- aAACGC-UGcCGUGUAGUCGUCGA-GCG- -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 116980 | 0.73 | 0.661009 |
Target: 5'- -cUGCGGCGGCuugggCAGCAGCg-GCg -3' miRNA: 3'- aaACGCUGCCGugua-GUCGUCGagCG- -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 1717 | 0.72 | 0.711325 |
Target: 5'- --gGCGACGGCGCucggaCGGgAGCUgCGCc -3' miRNA: 3'- aaaCGCUGCCGUGua---GUCgUCGA-GCG- -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 38830 | 0.76 | 0.50069 |
Target: 5'- --aGCGcCGGCugAggCAGCAGCgUCGCg -3' miRNA: 3'- aaaCGCuGCCGugUa-GUCGUCG-AGCG- -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 163099 | 0.76 | 0.510334 |
Target: 5'- --cGCGGCGGCcuCAUCGGCAGCgUCa- -3' miRNA: 3'- aaaCGCUGCCGu-GUAGUCGUCG-AGcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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