Results 21 - 40 of 239 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29826 | 3' | -54.9 | NC_006273.1 | + | 92597 | 0.72 | 0.750429 |
Target: 5'- --aGCGACGGCGgcugcuguugcuCGcCAGCGGCgCGCg -3' miRNA: 3'- aaaCGCUGCCGU------------GUaGUCGUCGaGCG- -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 111216 | 0.72 | 0.711325 |
Target: 5'- --gGCGGCGGCggugGCGUUGGCAGCaauaGCa -3' miRNA: 3'- aaaCGCUGCCG----UGUAGUCGUCGag--CG- -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 70804 | 0.75 | 0.579702 |
Target: 5'- -cUGCGACGGCAgCGcCAGCGGcCUgGCc -3' miRNA: 3'- aaACGCUGCCGU-GUaGUCGUC-GAgCG- -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 38830 | 0.76 | 0.50069 |
Target: 5'- --aGCGcCGGCugAggCAGCAGCgUCGCg -3' miRNA: 3'- aaaCGCuGCCGugUa-GUCGUCG-AGCG- -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 102610 | 0.71 | 0.803162 |
Target: 5'- --cGCGAaucauauaaaugccCGGCACGUCGuaCAGCUCGUc -3' miRNA: 3'- aaaCGCU--------------GCCGUGUAGUc-GUCGAGCG- -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 196679 | 0.71 | 0.769399 |
Target: 5'- --gGCGugGcGCACG-CAGCGGCcguaguugUCGCg -3' miRNA: 3'- aaaCGCugC-CGUGUaGUCGUCG--------AGCG- -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 219710 | 0.73 | 0.691337 |
Target: 5'- ---aCGGCGGCAaa-CAGCAGCaUCGCa -3' miRNA: 3'- aaacGCUGCCGUguaGUCGUCG-AGCG- -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 2172 | 0.77 | 0.462966 |
Target: 5'- --gGCGGCGGCAgCggCAGCAGCggcggCGCc -3' miRNA: 3'- aaaCGCUGCCGU-GuaGUCGUCGa----GCG- -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 95134 | 0.71 | 0.769399 |
Target: 5'- --aGCGACGGCAaaggcUCAGCcgcGGC-CGCg -3' miRNA: 3'- aaaCGCUGCCGUgu---AGUCG---UCGaGCG- -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 36924 | 0.8 | 0.321749 |
Target: 5'- cUUGUGACGGCG-AUCAGCAGC-CGUg -3' miRNA: 3'- aAACGCUGCCGUgUAGUCGUCGaGCG- -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 1717 | 0.72 | 0.711325 |
Target: 5'- --gGCGACGGCGCucggaCGGgAGCUgCGCc -3' miRNA: 3'- aaaCGCUGCCGUGua---GUCgUCGA-GCG- -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 2223 | 0.72 | 0.750429 |
Target: 5'- --gGCGAUGGCGgGUcCGGCGGCgUCGg -3' miRNA: 3'- aaaCGCUGCCGUgUA-GUCGUCG-AGCg -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 84635 | 0.74 | 0.640661 |
Target: 5'- ---cCGGCGGCugAUCuGCAGCgCGCu -3' miRNA: 3'- aaacGCUGCCGugUAGuCGUCGaGCG- -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 123764 | 0.75 | 0.589809 |
Target: 5'- --gGCGACGGUAgAUgucCAGguGCUUGCg -3' miRNA: 3'- aaaCGCUGCCGUgUA---GUCguCGAGCG- -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 80387 | 0.76 | 0.520055 |
Target: 5'- --aGCGGCGGCcgugGCggCGGCAGCggCGCa -3' miRNA: 3'- aaaCGCUGCCG----UGuaGUCGUCGa-GCG- -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 80950 | 0.76 | 0.50069 |
Target: 5'- -cUGCGGCGagucgcccaGCGgGUCGGcCAGCUCGCa -3' miRNA: 3'- aaACGCUGC---------CGUgUAGUC-GUCGAGCG- -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 122992 | 0.7 | 0.814549 |
Target: 5'- --gGCGACGGUccuuCGUCG--AGCUCGCa -3' miRNA: 3'- aaaCGCUGCCGu---GUAGUcgUCGAGCG- -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 157882 | 0.71 | 0.804931 |
Target: 5'- -aUG-GGCGGCugGUUgguggagagcuugAGUAGCUCGCu -3' miRNA: 3'- aaACgCUGCCGugUAG-------------UCGUCGAGCG- -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 204654 | 0.71 | 0.796922 |
Target: 5'- --aGCGAgGGCACAcuaGGCGG-UCGCg -3' miRNA: 3'- aaaCGCUgCCGUGUag-UCGUCgAGCG- -5' |
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29826 | 3' | -54.9 | NC_006273.1 | + | 209026 | 0.71 | 0.769399 |
Target: 5'- --cGCGugGGCAUAUCAGaAGC-CGg -3' miRNA: 3'- aaaCGCugCCGUGUAGUCgUCGaGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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