miRNA display CGI


Results 41 - 60 of 239 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29826 3' -54.9 NC_006273.1 + 185054 0.71 0.796922
Target:  5'- -cUGUGGCGGCG----GGCAGCaUCGCg -3'
miRNA:   3'- aaACGCUGCCGUguagUCGUCG-AGCG- -5'
29826 3' -54.9 NC_006273.1 + 219710 0.73 0.691337
Target:  5'- ---aCGGCGGCAaa-CAGCAGCaUCGCa -3'
miRNA:   3'- aaacGCUGCCGUguaGUCGUCG-AGCG- -5'
29826 3' -54.9 NC_006273.1 + 2172 0.77 0.462966
Target:  5'- --gGCGGCGGCAgCggCAGCAGCggcggCGCc -3'
miRNA:   3'- aaaCGCUGCCGU-GuaGUCGUCGa----GCG- -5'
29826 3' -54.9 NC_006273.1 + 133436 0.71 0.796922
Target:  5'- --cGCGACGGCGCGcgCAcGCGGgauuUUCGCu -3'
miRNA:   3'- aaaCGCUGCCGUGUa-GU-CGUC----GAGCG- -5'
29826 3' -54.9 NC_006273.1 + 36924 0.8 0.321749
Target:  5'- cUUGUGACGGCG-AUCAGCAGC-CGUg -3'
miRNA:   3'- aAACGCUGCCGUgUAGUCGUCGaGCG- -5'
29826 3' -54.9 NC_006273.1 + 173524 0.69 0.870677
Target:  5'- -cUGCucGGCGGCGUA-CAGCGGgUCGCg -3'
miRNA:   3'- aaACG--CUGCCGUGUaGUCGUCgAGCG- -5'
29826 3' -54.9 NC_006273.1 + 80950 0.76 0.50069
Target:  5'- -cUGCGGCGagucgcccaGCGgGUCGGcCAGCUCGCa -3'
miRNA:   3'- aaACGCUGC---------CGUgUAGUC-GUCGAGCG- -5'
29826 3' -54.9 NC_006273.1 + 153592 0.69 0.870677
Target:  5'- --aGCGGCGGCGugacCGGCGGUgcggUCGCg -3'
miRNA:   3'- aaaCGCUGCCGUgua-GUCGUCG----AGCG- -5'
29826 3' -54.9 NC_006273.1 + 21783 0.69 0.863246
Target:  5'- gUUGCGAuccUGGCGCGUCucuccGGCGGCUgugGCu -3'
miRNA:   3'- aAACGCU---GCCGUGUAG-----UCGUCGAg--CG- -5'
29826 3' -54.9 NC_006273.1 + 195505 0.7 0.846178
Target:  5'- -cUGCGggaucacgauggaacGCGuGCGCGUCcacagcgugacuuugAGCGGCUCGCc -3'
miRNA:   3'- aaACGC---------------UGC-CGUGUAG---------------UCGUCGAGCG- -5'
29826 3' -54.9 NC_006273.1 + 73659 0.7 0.831518
Target:  5'- --cGCGGCGGCGCAa-AGC-GCgagCGCa -3'
miRNA:   3'- aaaCGCUGCCGUGUagUCGuCGa--GCG- -5'
29826 3' -54.9 NC_006273.1 + 122992 0.7 0.814549
Target:  5'- --gGCGACGGUccuuCGUCG--AGCUCGCa -3'
miRNA:   3'- aaaCGCUGCCGu---GUAGUcgUCGAGCG- -5'
29826 3' -54.9 NC_006273.1 + 157882 0.71 0.804931
Target:  5'- -aUG-GGCGGCugGUUgguggagagcuugAGUAGCUCGCu -3'
miRNA:   3'- aaACgCUGCCGugUAG-------------UCGUCGAGCG- -5'
29826 3' -54.9 NC_006273.1 + 176804 0.71 0.778706
Target:  5'- -cUGCGuccGCuGCACAUCGGCguggcuGGCUUGCa -3'
miRNA:   3'- aaACGC---UGcCGUGUAGUCG------UCGAGCG- -5'
29826 3' -54.9 NC_006273.1 + 95134 0.71 0.769399
Target:  5'- --aGCGACGGCAaaggcUCAGCcgcGGC-CGCg -3'
miRNA:   3'- aaaCGCUGCCGUgu---AGUCG---UCGaGCG- -5'
29826 3' -54.9 NC_006273.1 + 92597 0.72 0.750429
Target:  5'- --aGCGACGGCGgcugcuguugcuCGcCAGCGGCgCGCg -3'
miRNA:   3'- aaaCGCUGCCGU------------GUaGUCGUCGaGCG- -5'
29826 3' -54.9 NC_006273.1 + 111216 0.72 0.711325
Target:  5'- --gGCGGCGGCggugGCGUUGGCAGCaauaGCa -3'
miRNA:   3'- aaaCGCUGCCG----UGUAGUCGUCGag--CG- -5'
29826 3' -54.9 NC_006273.1 + 84635 0.74 0.640661
Target:  5'- ---cCGGCGGCugAUCuGCAGCgCGCu -3'
miRNA:   3'- aaacGCUGCCGugUAGuCGUCGaGCG- -5'
29826 3' -54.9 NC_006273.1 + 123764 0.75 0.589809
Target:  5'- --gGCGACGGUAgAUgucCAGguGCUUGCg -3'
miRNA:   3'- aaaCGCUGCCGUgUA---GUCguCGAGCG- -5'
29826 3' -54.9 NC_006273.1 + 80387 0.76 0.520055
Target:  5'- --aGCGGCGGCcgugGCggCGGCAGCggCGCa -3'
miRNA:   3'- aaaCGCUGCCG----UGuaGUCGUCGa-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.